Effective results for Maribacter sp. HTCC2170 (eggnog40)

Summary

Number of putative secreted proteins: 98
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 33 eukaryotic-like domains, contained in 98 proteins (10 high, 88 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
313603.FB2170_01402				(PF09112) (PF09113)	ER
313603.FB2170_10449				(PF16353) (PF02929)	ER
313603.FB2170_03365				(PF16757) (PF01120)	ER
313603.FB2170_04030				(PF16353) (PF02929)	ER
313603.FB2170_02145				(PF16757) (PF01120)	ER
313603.FB2170_11386				(PF16353) (PF02929)	ER
313603.FB2170_06620				(PF07971) (PF14683)	ER
313603.FB2170_15013				(PF16353) (PF02929)	ER
313603.FB2170_14088				PF15902	ER
313603.FB2170_01407				(PF01120)	ER
313603.FB2170_01397				(PF07971)	ER
313603.FB2170_11916				(PF06452)	ER
313603.FB2170_11356				(PF14329)	ER
313603.FB2170_08139				(PF07593)	ER
313603.FB2170_01412				(PF07971)	ER
313603.FB2170_01417				(PF06452)	ER
313603.FB2170_06370				(PF05684)	ER
313603.FB2170_05360				PF15902	ER
313603.FB2170_15208				(PF15071)	ER
313603.FB2170_09441				(PF06439)	ER
313603.FB2170_08659				PF00014	ER
313603.FB2170_01462				(PF13290)	ER
313603.FB2170_09296				(PF06439)	ER
313603.FB2170_05965				(PF10988)	ER
313603.FB2170_15273				(PF13415)	(mitochondrial)
313603.FB2170_09456				(PF16347)	ER
313603.FB2170_07869				(PF10988)	ER
313603.FB2170_00670				(PF06439)	ER
313603.FB2170_07055				(PF06452)	(mitochondrial)
313603.FB2170_04995				(PF01120)	ER
313603.FB2170_15323				(PF10988)	ER
313603.FB2170_06910				(PF14329)	ER
313603.FB2170_08664				PF15902	ER
313603.FB2170_05115				(PF16347)	ER
313603.FB2170_10666				(PF16401)	ER; (ER)
313603.FB2170_17116				(PF10988)	ER
313603.FB2170_13101				(PF06439)	ER
313603.FB2170_08339				(PF04784)	ER
313603.FB2170_01931				(PF16347)	ER
313603.FB2170_04510				(PF14588)	ER
313603.FB2170_10111				(PF13290) (PF11721) (PF08757)
313603.FB2170_00215				(PF14588)	(mitochondrial)
313603.FB2170_11601				(PF06439)	ER
313603.FB2170_10641				(PF16347)	ER
313603.FB2170_13908				PF15902	ER
313603.FB2170_10106				(PF11721)	ER
313603.FB2170_09821				(PF16347)	ER
313603.FB2170_08039				(PF06439)	ER
313603.FB2170_05125				PF15902	ER
313603.FB2170_08149				(PF07593)	ER
313603.FB2170_02205				(PF08757)	mitochondrial; (mitochondrial)
313603.FB2170_06090				(PF06439)	ER
313603.FB2170_11661				(PF13653)	ER
313603.FB2170_01941				(PF16347)	ER
313603.FB2170_03920				(PF13415)	ER
313603.FB2170_08379				(PF04784)	ER
313603.FB2170_08019				PF15902	ER
313603.FB2170_00315				(PF06439)	ER
313603.FB2170_02885				(PF14938)	ER
313603.FB2170_01372				(PF07593)	ER
313603.FB2170_03865				(PF07971)	ER
313603.FB2170_12266				(PF08757)	ER
313603.FB2170_11461				(PF06452)	ER
313603.FB2170_09436				PF01731	ER
313603.FB2170_17086				(PF10988)	ER
313603.FB2170_06625				(PF07971)	ER
313603.FB2170_04585				(PF05935)	ER
313603.FB2170_00770				(PF06439)	ER
313603.FB2170_04730				(PF07593)	ER
313603.FB2170_10971				(PF10988)	ER
313603.FB2170_12586				(PF11721)	ER
313603.FB2170_01432				(PF07971)	ER
313603.FB2170_09396				(PF06439)	ER
313603.FB2170_07170				(PF06439)	ER
313603.FB2170_11346				(PF14329)	(ER)
313603.FB2170_08134				(PF07593)	(mitochondrial)
313603.FB2170_01467				(PF13287)	(ER)
313603.FB2170_02105				(PF01120)	(plastid)
313603.FB2170_02140				(PF13287) (PF01120)
313603.FB2170_02560				(PF05935)	(mitochondrial)
313603.FB2170_02090				(PF13290) (PF01120)
313603.FB2170_08004				(PF14588)	(ER)
313603.FB2170_04545				(PF16011)
313603.FB2170_04380				PF15902
313603.FB2170_14113				(PF07766)
313603.FB2170_03170				(PF06452)
313603.FB2170_03165				(PF06452)
313603.FB2170_14393				(PF10988)
313603.FB2170_16091				(PF05684)
313603.FB2170_15388				(PF14588)
313603.FB2170_06080				(PF16401)
313603.FB2170_11656				PF15902
313603.FB2170_08744				(PF08757)
313603.FB2170_03050				(PF10988)
313603.FB2170_12071				(PF06439)
313603.FB2170_04050				(PF06439)
313603.FB2170_05235				(PF16347)
313603.FB2170_16021				(PF05153)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================