Effective results for Prevotella melaninogenica ATCC 25845 (eggnog40)

Summary

Number of putative secreted proteins: 44
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 44 proteins (2 high, 42 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
553174.HMPREF0659_A7183				(PF16353) (PF02929)	ER
553174.HMPREF0659_A6982				(PF16353) (PF02929)	ER
553174.HMPREF0659_A7284				(PF03644)	ER
553174.HMPREF0659_A7283				(PF03644)	ER
553174.HMPREF0659_A7262				(PF16353) (PF02929)	(mitochondrial)
553174.HMPREF0659_A6609				(PF00328)	ER
553174.HMPREF0659_A6895				(PF16313)	ER
553174.HMPREF0659_A5443				(PF16313)	(ER)
553174.HMPREF0659_A5444				(PF16313)	ER
553174.HMPREF0659_A6065				(PF03051)	(ER)
553174.HMPREF0659_A5500				PF16269	(ER)
553174.HMPREF0659_A5411				(PF03092)	ER
553174.HMPREF0659_A5959				(PF03051)	ER
553174.HMPREF0659_A6552				(PF16313)	ER
553174.HMPREF0659_A6551				(PF16313)	ER
553174.HMPREF0659_A7041				(PF12256)	ER
553174.HMPREF0659_A6011				(PF00328)	ER
553174.HMPREF0659_A6010				(PF09825)	ER
553174.HMPREF0659_A6723				(PF02971) (PF07837)
553174.HMPREF0659_A5826				(PF05970) (PF02689)
553174.HMPREF0659_A6095				(PF13155)	(plastid)
553174.HMPREF0659_A6062				(PF16353) (PF02929)
553174.HMPREF0659_A5824				(PF01715)
553174.HMPREF0659_A6446				(PF16011)
553174.HMPREF0659_A6904				(PF03630)
553174.HMPREF0659_A5934				(PF01715)
553174.HMPREF0659_A6521				(PF16314)
553174.HMPREF0659_A6249				(PF13086)
553174.HMPREF0659_A6435				(PF07693)
553174.HMPREF0659_A6344				(PF05693)
553174.HMPREF0659_A6641				PF13854
553174.HMPREF0659_A5737				(PF13155)
553174.HMPREF0659_A5987				(PF13086)
553174.HMPREF0659_A6297				(PF13086)
553174.HMPREF0659_A5223				(PF05970)
553174.HMPREF0659_A5717				(PF07693)
553174.HMPREF0659_A6370				(PF04383)
553174.HMPREF0659_A6968				(PF07693)
553174.HMPREF0659_A7387				(PF04383)
553174.HMPREF0659_A7045				(PF12256)
553174.HMPREF0659_A6401				(PF03051)
553174.HMPREF0659_A6128				(PF13155)
553174.HMPREF0659_A6233				(PF13151)
553174.HMPREF0659_A5751				(PF13155)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================