Effective results for Odoribacter splanchnicus DSM 20712 (eggnog40)
Summary
Number of putative secreted proteins: 269
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 42 eukaryotic-like domains, contained in 269 proteins (39 high, 230 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 709991.Odosp_1858 | (PF13899) PF13905 | ER | |||
| 709991.Odosp_1100 | (PF00578) (PF13899) | ER | |||
| 709991.Odosp_3414 | (PF00578) (PF00085) | ER | |||
| 709991.Odosp_2217 | (PF00085) PF13905 | ER | |||
| 709991.Odosp_2204 | (PF13899) (PF00085) | ER | |||
| 709991.Odosp_2295 | (PF00578) (PF00085) | ER | |||
| 709991.Odosp_3603 | (PF00578) | ER | |||
| 709991.Odosp_2369 | PF13905 | ER | |||
| 709991.Odosp_0093 | (PF08534) | ER | |||
| 709991.Odosp_1471 | (PF00085) | ER | |||
| 709991.Odosp_0355 | (PF05598) | mitochondrial | |||
| 709991.Odosp_2662 | PF17170 | ER | |||
| 709991.Odosp_1612 | (PF00578) | ER | |||
| 709991.Odosp_1766 | (PF00578) | ER | |||
| 709991.Odosp_2752 | (PF13899) | ER | |||
| 709991.Odosp_3194 | (PF13899) | ER | |||
| 709991.Odosp_3403 | (PF08534) | ER | |||
| 709991.Odosp_2802 | (PF00930) | ER | |||
| 709991.Odosp_3406 | PF13905 | (ER) | |||
| 709991.Odosp_1626 | (PF00085) | ER | |||
| 709991.Odosp_0479 | (PF00578) | ER | |||
| 709991.Odosp_0989 | (PF00930) | ER | |||
| 709991.Odosp_0870 | (PF05598) | mitochondrial | |||
| 709991.Odosp_2237 | (PF05598) | mitochondrial | |||
| 709991.Odosp_2347 | (PF13899) | ER | |||
| 709991.Odosp_0277 | (PF03415) | ER | |||
| 709991.Odosp_0274 | PF17170 | ER | |||
| 709991.Odosp_0271 | PF17170 | ER | |||
| 709991.Odosp_0460 | (PF08534) | ER | |||
| 709991.Odosp_1029 | (PF08534) | ER | |||
| 709991.Odosp_0519 | PF17170 | (mitochondrial) | |||
| 709991.Odosp_3065 | PF17170 | ER | |||
| 709991.Odosp_2226 | PF17170 | ER | |||
| 709991.Odosp_1807 | (PF05598) | mitochondrial | |||
| 709991.Odosp_2574 | PF13905 | ER | |||
| 709991.Odosp_2575 | PF13905 | ER | |||
| 709991.Odosp_0269 | PF17170 | ER | |||
| 709991.Odosp_2579 | (PF00085) | ER | |||
| 709991.Odosp_3175 | (PF00488) | mitochondrial; (mitochondrial) | |||
| 709991.Odosp_2777 | (PF05096) | ER | |||
| 709991.Odosp_0682 | (PF16313) | ER | |||
| 709991.Odosp_0684 | PF17170 | ER | |||
| 709991.Odosp_0040 | (PF05598) | (mitochondrial) | |||
| 709991.Odosp_2916 | PF17170 | ER | |||
| 709991.Odosp_0459 | (PF00930) | ER | |||
| 709991.Odosp_0457 | (PF05598) | mitochondrial | |||
| 709991.Odosp_0529 | (PF13173) | (mitochondrial) | |||
| 709991.Odosp_3093 | PF17170 | ER | |||
| 709991.Odosp_3435 | (PF01637) | (mitochondrial) | |||
| 709991.Odosp_3239 | (PF00578) | ER | |||
| 709991.Odosp_0030 | (PF04450) | ER | |||
| 709991.Odosp_2963 | (PF08281) | mitochondrial | |||
| 709991.Odosp_2962 | PF17170 | ER | |||
| 709991.Odosp_0448 | (PF05598) | mitochondrial | |||
| 709991.Odosp_1317 | (PF00578) | ER | |||
| 709991.Odosp_2205 | (PF09471) | ER | |||
| 709991.Odosp_2370 | (PF00578) | ER | |||
| 709991.Odosp_2371 | (PF00578) | ER | |||
| 709991.Odosp_1557 | PF13905 | ER | |||
| 709991.Odosp_3445 | (PF00930) | ER | |||
| 709991.Odosp_0028 | (PF00085) | ER | |||
| 709991.Odosp_1018 | (PF05598) | (mitochondrial) | |||
| 709991.Odosp_0949 | (PF05598) | mitochondrial | |||
| 709991.Odosp_2412 | (PF00930) | ER | |||
| 709991.Odosp_3143 | (PF00488) (PF05192) | (mitochondrial) | |||
| 709991.Odosp_3144 | (PF09822) | (ER) | |||
| 709991.Odosp_1547 | PF13905 | ER | |||
| 709991.Odosp_3458 | (PF08534) | ER | |||
| 709991.Odosp_3459 | (PF08534) | ER | |||
| 709991.Odosp_1787 | PF17170 | ER | |||
| 709991.Odosp_0161 | (PF16313) | ER | |||
| 709991.Odosp_0551 | (PF03571) | ER | |||
| 709991.Odosp_1379 | (PF00578) | ER | |||
| 709991.Odosp_0481 | (PF16313) | ER | |||
| 709991.Odosp_0956 | (PF13151) | mitochondrial | |||
| 709991.Odosp_0486 | (PF08534) | ER | |||
| 709991.Odosp_0487 | (PF00578) | ER | |||
| 709991.Odosp_1204 | (PF05598) | mitochondrial | |||
| 709991.Odosp_1991 | PF17170 | ER | |||
| 709991.Odosp_0224 | (PF13899) | ER | |||
| 709991.Odosp_2532 | (PF13155) (PF01807) (PF08275) | ||||
| 709991.Odosp_3664 | (PF00930) | ER | |||
| 709991.Odosp_3666 | (PF09471) | ER | |||
| 709991.Odosp_3668 | PF17170 | ER | |||
| 709991.Odosp_3264 | (PF00578) | ER | |||
| 709991.Odosp_3591 | (PF09822) | (ER) | |||
| 709991.Odosp_1681 | (PF00578) | ER | |||
| 709991.Odosp_2955 | (PF16313) | ER | |||
| 709991.Odosp_2957 | PF17170 | ER | |||
| 709991.Odosp_1758 | (PF00578) | ER | |||
| 709991.Odosp_0589 | (PF00085) | ER | |||
| 709991.Odosp_3056 | PF13905 | ER | |||
| 709991.Odosp_3057 | PF13905 | ER | |||
| 709991.Odosp_1562 | PF13905 | ER | |||
| 709991.Odosp_0101 | PF13905 | ER | |||
| 709991.Odosp_0100 | (PF00578) | ER | |||
| 709991.Odosp_0616 | (PF08534) | ER | |||
| 709991.Odosp_0778 | (PF00578) | ER | |||
| 709991.Odosp_2601 | (PF13155) (PF01807) (PF08275) | ||||
| 709991.Odosp_3488 | PF17170 | ER | |||
| 709991.Odosp_0608 | (PF05598) | mitochondrial | |||
| 709991.Odosp_2675 | (PF00578) | ER | |||
| 709991.Odosp_2677 | (PF00085) | ER | |||
| 709991.Odosp_2676 | (PF13899) | ER | |||
| 709991.Odosp_2073 | (PF05598) | (mitochondrial) | |||
| 709991.Odosp_3658 | PF17170 | ER | |||
| 709991.Odosp_3655 | PF17170 | (mitochondrial); mitochondrial | |||
| 709991.Odosp_3656 | PF17170 | (ER) | |||
| 709991.Odosp_3492 | (PF09822) | ER | |||
| 709991.Odosp_1728 | (PF00085) | ER | |||
| 709991.Odosp_1726 | (PF13899) | ER | |||
| 709991.Odosp_1727 | PF13905 | ER | |||
| 709991.Odosp_0759 | (PF05598) | mitochondrial | |||
| 709991.Odosp_0083 | (PF00578) | ER | |||
| 709991.Odosp_1880 | (PF05598) | mitochondrial | |||
| 709991.Odosp_2280 | PF13905 | ER | |||
| 709991.Odosp_2663 | (PF00578) | ER | |||
| 709991.Odosp_3621 | (PF05096) | ER | |||
| 709991.Odosp_3620 | (PF01030) | ER | |||
| 709991.Odosp_3531 | (PF00578) | ER | |||
| 709991.Odosp_1440 | (PF04187) | ER | |||
| 709991.Odosp_1716 | (PF13899) | ER | |||
| 709991.Odosp_1666 | (PF09471) | ER | |||
| 709991.Odosp_1660 | (PF16313) | mitochondrial | |||
| 709991.Odosp_1872 | (PF08534) | ER | |||
| 709991.Odosp_1419 | (PF04187) | ER | |||
| 709991.Odosp_1670 | (PF00578) | ER | |||
| 709991.Odosp_1842 | PF17170 | ER | |||
| 709991.Odosp_2266 | (PF00578) | ER | |||
| 709991.Odosp_2005 | (PF13155) | mitochondrial; (mitochondrial) | |||
| 709991.Odosp_2648 | PF17170 | ER | |||
| 709991.Odosp_3617 | (PF01807) (PF08275) | ||||
| 709991.Odosp_1042 | (PF09822) | (ER) | |||
| 709991.Odosp_1593 | (PF08281) | (mitochondrial) | |||
| 709991.Odosp_3316 | (PF13155) (PF01807) | ||||
| 709991.Odosp_1146 | (PF03415) | (ER) | |||
| 709991.Odosp_3142 | (PF00488) (PF05192) | ||||
| 709991.Odosp_1200 | (PF13155) (PF01807) | ||||
| 709991.Odosp_3590 | (PF09822) | (mitochondrial) | |||
| 709991.Odosp_0175 | (PF13173) | (plastid) | |||
| 709991.Odosp_0586 | (PF00488) (PF05192) | ||||
| 709991.Odosp_1969 | (PF02357) | (mitochondrial) | |||
| 709991.Odosp_2437 | (PF13271) | (mitochondrial) | |||
| 709991.Odosp_1516 | (PF13173) | (mitochondrial) | |||
| 709991.Odosp_2674 | (PF00488) (PF05192) | ||||
| 709991.Odosp_1707 | (PF13173) | (mitochondrial) | |||
| 709991.Odosp_0734 | (PF07837) (PF02971) | ||||
| 709991.Odosp_3514 | (PF05598) | ||||
| 709991.Odosp_3600 | (PF05598) | ||||
| 709991.Odosp_0396 | (PF00578) | ||||
| 709991.Odosp_1813 | (PF01637) | ||||
| 709991.Odosp_0259 | (PF00488) | ||||
| 709991.Odosp_0253 | (PF02689) | ||||
| 709991.Odosp_2746 | (PF08281) | ||||
| 709991.Odosp_0095 | (PF08281) | ||||
| 709991.Odosp_1477 | (PF08281) | ||||
| 709991.Odosp_3610 | (PF08281) | ||||
| 709991.Odosp_3344 | (PF05598) | ||||
| 709991.Odosp_0351 | (PF08281) | ||||
| 709991.Odosp_1617 | (PF08281) | ||||
| 709991.Odosp_2242 | (PF08281) | ||||
| 709991.Odosp_3198 | (PF08281) | ||||
| 709991.Odosp_3571 | (PF12762) | ||||
| 709991.Odosp_3407 | (PF08281) | ||||
| 709991.Odosp_3409 | (PF13899) | ||||
| 709991.Odosp_1594 | (PF05598) | ||||
| 709991.Odosp_0069 | (PF13271) | ||||
| 709991.Odosp_0985 | (PF02357) | ||||
| 709991.Odosp_0875 | (PF00085) | ||||
| 709991.Odosp_2238 | (PF13173) | ||||
| 709991.Odosp_2344 | (PF05598) | ||||
| 709991.Odosp_2346 | (PF08281) | ||||
| 709991.Odosp_2568 | (PF08281) | ||||
| 709991.Odosp_3185 | (PF08281) | ||||
| 709991.Odosp_2766 | (PF00578) | ||||
| 709991.Odosp_1632 | (PF00085) | ||||
| 709991.Odosp_1122 | (PF03571) | ||||
| 709991.Odosp_1028 | (PF08281) | ||||
| 709991.Odosp_2225 | (PF08281) | ||||
| 709991.Odosp_1803 | (PF01715) | ||||
| 709991.Odosp_2353 | (PF08281) | ||||
| 709991.Odosp_2354 | (PF08281) | ||||
| 709991.Odosp_2684 | (PF08281) | ||||
| 709991.Odosp_1512 | (PF01637) | ||||
| 709991.Odosp_3368 | (PF13173) | ||||
| 709991.Odosp_0688 | (PF08281) | ||||
| 709991.Odosp_0458 | PF13905 | ||||
| 709991.Odosp_0452 | (PF08281) | ||||
| 709991.Odosp_1035 | (PF08281) | ||||
| 709991.Odosp_2363 | (PF08281) | ||||
| 709991.Odosp_2360 | (PF00085) | ||||
| 709991.Odosp_3163 | (PF08281) | ||||
| 709991.Odosp_3300 | PF16269 | ||||
| 709991.Odosp_3434 | (PF13173) | ||||
| 709991.Odosp_0441 | (PF00930) | ||||
| 709991.Odosp_1003 | (PF13173) | ||||
| 709991.Odosp_2206 | (PF08281) | ||||
| 709991.Odosp_0220 | (PF01348) | ||||
| 709991.Odosp_1553 | (PF08281) | ||||
| 709991.Odosp_0022 | (PF08281) | ||||
| 709991.Odosp_2970 | (PF00085) | ||||
| 709991.Odosp_0156 | (PF08281) | ||||
| 709991.Odosp_1173 | (PF08281) | ||||
| 709991.Odosp_3596 | (PF08281) | ||||
| 709991.Odosp_3262 | (PF00578) | ||||
| 709991.Odosp_0494 | (PF08281) | ||||
| 709991.Odosp_2411 | (PF08281) | ||||
| 709991.Odosp_3141 | (PF12437) | ||||
| 709991.Odosp_0517 | (PF01715) | ||||
| 709991.Odosp_1782 | (PF08281) | ||||
| 709991.Odosp_2949 | (PF08281) | ||||
| 709991.Odosp_1167 | (PF05598) | ||||
| 709991.Odosp_1160 | (PF08281) | ||||
| 709991.Odosp_2896 | (PF05096) | ||||
| 709991.Odosp_0555 | (PF00578) | ||||
| 709991.Odosp_1207 | (PF01348) | ||||
| 709991.Odosp_0225 | (PF08281) | ||||
| 709991.Odosp_0311 | (PF08281) | ||||
| 709991.Odosp_3048 | (PF00578) | ||||
| 709991.Odosp_3042 | (PF02357) | ||||
| 709991.Odosp_3260 | (PF08281) | ||||
| 709991.Odosp_3465 | (PF08281) | ||||
| 709991.Odosp_3469 | (PF08281) | ||||
| 709991.Odosp_3468 | (PF13173) | ||||
| 709991.Odosp_0174 | (PF05598) | ||||
| 709991.Odosp_1756 | (PF08281) | ||||
| 709991.Odosp_1751 | (PF08281) | ||||
| 709991.Odosp_1211 | (PF12437) | ||||
| 709991.Odosp_2433 | (PF13173) | ||||
| 709991.Odosp_0365 | (PF08281) | ||||
| 709991.Odosp_3586 | (PF16314) | ||||
| 709991.Odosp_3587 | (PF08281) | ||||
| 709991.Odosp_3474 | (PF08534) | ||||
| 709991.Odosp_0105 | (PF08281) | ||||
| 709991.Odosp_0107 | (PF05598) | ||||
| 709991.Odosp_0779 | (PF02026) | ||||
| 709991.Odosp_3061 | (PF08281) | ||||
| 709991.Odosp_3481 | (PF08281) | ||||
| 709991.Odosp_0298 | (PF08281) | ||||
| 709991.Odosp_1735 | (PF08281) | ||||
| 709991.Odosp_2075 | (PF12762) | ||||
| 709991.Odosp_3657 | PF17170 | ||||
| 709991.Odosp_3251 | (PF08281) | ||||
| 709991.Odosp_0296 | (PF05693) | ||||
| 709991.Odosp_1431 | (PF13207) | ||||
| 709991.Odosp_2854 | (PF12762) | ||||
| 709991.Odosp_1724 | (PF05598) | ||||
| 709991.Odosp_1723 | (PF08281) | ||||
| 709991.Odosp_0638 | (PF12762) | ||||
| 709991.Odosp_1650 | (PF16011) | ||||
| 709991.Odosp_0085 | (PF08281) | ||||
| 709991.Odosp_0910 | (PF08281) | ||||
| 709991.Odosp_2286 | (PF08281) | ||||
| 709991.Odosp_3398 | (PF08281) | ||||
| 709991.Odosp_0353 | (PF08281) | ||||
| 709991.Odosp_2716 | (PF08281) | ||||
| 709991.Odosp_1534 | (PF08281) | ||||
| 709991.Odosp_2848 | PF13905 | ||||
| 709991.Odosp_0625 | (PF08281) | ||||
| 709991.Odosp_0723 | (PF08281) | ||||
| 709991.Odosp_0929 | (PF12762) | ||||
| 709991.Odosp_1891 | (PF12762) | ||||
| 709991.Odosp_1892 | (PF08281) | ||||
| 709991.Odosp_2010 | (PF08357) | ||||
| 709991.Odosp_2870 | (PF08281) | ||||
| 709991.Odosp_1671 | (PF08281) | ||||
| 709991.Odosp_2466 | (PF08281) | ||||
| 709991.Odosp_3022 | (PF01637) | ||||
| 709991.Odosp_3020 | (PF02357) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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