Effective results for Prevotella bryantii B14 (eggnog40)

Summary

Number of putative secreted proteins: 99
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 34 eukaryotic-like domains, contained in 99 proteins (8 high, 91 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
752555.PBR_2261(PF17132) (PF00295)ER
752555.PBR_1566(PF05448)ER
752555.PBR_2910(PF13565)(mitochondrial)
752555.PBR_2913PF08707mitochondrial; (mitochondrial)
752555.PBR_0562(PF05686)(mitochondrial)
752555.PBR_1773(PF16355)ER
752555.PBR_0354(PF03629)ER
752555.PBR_0425(PF16355)ER
752555.PBR_0733(PF01095)ER
752555.PBR_1604(PF15979)ER
752555.PBR_2074(PF17132)ER
752555.PBR_0392(PF03629)ER
752555.PBR_0865(PF13905)ER
752555.PBR_0286(PF14587)ER
752555.PBR_0285(PF14587)ER
752555.PBR_2027PF12812ER; (ER)
752555.PBR_2280(PF01223)ER
752555.PBR_0609(PF00295)ER
752555.PBR_0272PF08707mitochondrial; (mitochondrial)
752555.PBR_0275(PF13565)(mitochondrial)
752555.PBR_1897(PF01223)ER
752555.PBR_0298(PF03051)ER
752555.PBR_2509(PF03051)ER
752555.PBR_0100(PF13905)ER
752555.PBR_1508(PF01095)ER
752555.PBR_1877(PF01095)ER
752555.PBR_0835(PF00295)ER
752555.PBR_2742(PF00295)ER
752555.PBR_1467(PF13905)ER
752555.PBR_0128(PF00295)ER
752555.PBR_1869(PF03051)ER
752555.PBR_1219(PF03629)ER
752555.PBR_2438PF08707mitochondrial; (mitochondrial)
752555.PBR_0315(PF00295)ER
752555.PBR_0017(PF13905)ER
752555.PBR_0309(PF00295)ER
752555.PBR_0787(PF16355)(ER)
752555.PBR_1220(PF17132)ER
752555.PBR_2441(PF13565)(mitochondrial)
752555.PBR_1572(PF13151)(plastid)
752555.PBR_0441(PF00295)(plastid)
752555.PBR_0544(PF13565)(mitochondrial)
752555.PBR_1568(PF01095)
752555.PBR_2915(PF03235)
752555.PBR_0216PF16314
752555.PBR_0218(PF00908)
752555.PBR_2693(PF03629)
752555.PBR_0692(PF13020)
752555.PBR_0355(PF05448)
752555.PBR_1744(PF13155)
752555.PBR_0643(PF14307)
752555.PBR_0641(PF04991)
752555.PBR_0239(PF14307)
752555.PBR_0507(PF00295)
752555.PBR_1343(PF13155)
752555.PBR_2076(PF13565)
752555.PBR_0240(PF14307)
752555.PBR_0247(PF00908)
752555.PBR_0864(PF13565)
752555.PBR_1638PF16314
752555.PBR_1721(PF12437)
752555.PBR_1436(PF04991)
752555.PBR_1435(PF01128)
752555.PBR_1922(PF13020)
752555.PBR_0253(PF00908)
752555.PBR_0254(PF00908)
752555.PBR_2632(PF01624)not used
752555.PBR_1652(PF13155)
752555.PBR_2516(PF03630)
752555.PBR_0114(PF15979)
752555.PBR_0270(PF03235)
752555.PBR_0071(PF01624)
752555.PBR_0072(PF01624)not used
752555.PBR_1892PF16269
752555.PBR_2729(PF14512)
752555.PBR_2455(PF05704)
752555.PBR_0598(PF01715)
752555.PBR_0533(PF01128)
752555.PBR_2182(PF01715)
752555.PBR_2184(PF02689)
752555.PBR_1180(PF13155)
752555.PBR_0639(PF01128)
752555.PBR_1466(PF12437)
752555.PBR_2643(PF14512)
752555.PBR_2436(PF03235)
752555.PBR_1845(PF01223)
752555.PBR_2156(PF05693)
752555.PBR_0558(PF04991)
752555.PBR_1783PF08707
752555.PBR_1309(PF16355)
752555.PBR_1161(PF00562)
752555.PBR_1160(PF00562)
752555.PBR_0764(PF16355)
752555.PBR_1228(PF05448)
752555.PBR_2666(PF13565)
752555.PBR_2661(PF03235)
752555.PBR_2660(PF03235)
752555.PBR_0573(PF01223)
752555.PBR_0689(PF13151)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================