Effective results for Prevotella oralis ATCC 33269 (eggnog40)

Summary

Number of putative secreted proteins: 51
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 51 proteins (4 high, 47 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
873533.HMPREF0663_11791				PF16334 PF16335 PF08760 PF17168	ER
873533.HMPREF0663_10916				PF16334 PF16335 PF08760 PF17168	ER
873533.HMPREF0663_10918				PF16334 PF16335 PF08760 PF17168	ER
873533.HMPREF0663_10601				(PF13905)	ER
873533.HMPREF0663_10987				(PF03051)	ER
873533.HMPREF0663_10215				(PF07971)	ER
873533.HMPREF0663_10417				(PF03051)	ER
873533.HMPREF0663_12266				(PF00216)	mitochondrial; (mitochondrial)
873533.HMPREF0663_10337				(PF05704)	mitochondrial
873533.HMPREF0663_11309				(PF07971)	ER
873533.HMPREF0663_11870				(PF07971)	ER
873533.HMPREF0663_12470				(PF00686)	(mitochondrial)
873533.HMPREF0663_10693				(PF00328)	ER
873533.HMPREF0663_10901				PF11885	(ER)
873533.HMPREF0663_11530				(PF07971)	ER
873533.HMPREF0663_10259				(PF13905)	ER
873533.HMPREF0663_10589				(PF07971)	ER
873533.HMPREF0663_11860				(PF03644)	ER
873533.HMPREF0663_11861				(PF03644)	ER
873533.HMPREF0663_11311				(PF07971)	ER
873533.HMPREF0663_10387				(PF03663)	ER
873533.HMPREF0663_12157				(PF01715)	mitochondrial
873533.HMPREF0663_11179				(PF03663)	ER
873533.HMPREF0663_11713				(PF13905)	ER
873533.HMPREF0663_10447				(PF00328)	ER
873533.HMPREF0663_11802				(PF00216)	(mitochondrial)
873533.HMPREF0663_11310				(PF04450)	plastid
873533.HMPREF0663_12196				(PF00216)	(mitochondrial)
873533.HMPREF0663_12170				(PF05693)
873533.HMPREF0663_11557				(PF03051)
873533.HMPREF0663_10865				(PF04488)
873533.HMPREF0663_10866				(PF11051)
873533.HMPREF0663_11585				(PF13155)
873533.HMPREF0663_11105				(PF13155)
873533.HMPREF0663_10898				(PF04488)
873533.HMPREF0663_12265				(PF00216)
873533.HMPREF0663_12312				(PF00216)
873533.HMPREF0663_12124				(PF00216)
873533.HMPREF0663_12201				(PF00216)
873533.HMPREF0663_11245				(PF16314)
873533.HMPREF0663_10203				(PF13155)
873533.HMPREF0663_11237				(PF16011)
873533.HMPREF0663_10291				(PF00216)
873533.HMPREF0663_11514				(PF00216)
873533.HMPREF0663_12397				(PF13905)
873533.HMPREF0663_11002				(PF03630)
873533.HMPREF0663_10025				(PF00686)
873533.HMPREF0663_12140				(PF00216)
873533.HMPREF0663_12417				(PF02689)
873533.HMPREF0663_12415				(PF01715)
873533.HMPREF0663_11147				(PF13155)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================