Metamenu

Effective results for Cyclobacterium marinum DSM 745 (eggnog40)

Summary

Number of putative secreted proteins: 391
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 63 eukaryotic-like domains, contained in 391 proteins (86 high, 305 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
880070.Cycma_4737(PF07940) (PF16889) (PF13229)ER
880070.Cycma_4406PF11721 (PF13229)ER
880070.Cycma_3985PF11721 (PF13229)ER
880070.Cycma_3182PF16347 (PF00884)ER
880070.Cycma_2569(PF13517) (PF07593)ER
880070.Cycma_4907PF16347 (PF00884)ER
880070.Cycma_2685PF16347 (PF00884)(ER); ER
880070.Cycma_3797PF16347 (PF00884)(ER)
880070.Cycma_3427(PF08124) (PF02884)(ER)
880070.Cycma_3897(PF13517) (PF07593)ER
880070.Cycma_4330PF12904 (PF13204)ER
880070.Cycma_2971PF16347 (PF00884)ER
880070.Cycma_1788(PF06283) (PF07995)ER
880070.Cycma_0174PF16347 (PF00884)ER
880070.Cycma_4801(PF01663) (PF13287)ER
880070.Cycma_4066PF11721 (PF13964)ER
880070.Cycma_0765PF11721 (PF13229)ER
880070.Cycma_0764PF11721 (PF13229)ER
880070.Cycma_1984(PF13517) (PF07593)ER
880070.Cycma_2459PF16347 (PF00884)ER
880070.Cycma_2458(PF14707) (PF00884)ER
880070.Cycma_2674PF16347 (PF00884)ER
880070.Cycma_3651(PF14707) (PF00884)ER
880070.Cycma_3657(PF13517) (PF07593)ER
880070.Cycma_0757(PF07940) (PF16889)ER
880070.Cycma_3820PF16347 (PF00884)ER
880070.Cycma_3532(PF14707) (PF00884)ER
880070.Cycma_0727PF11721 (PF13415)ER; (ER)
880070.Cycma_1671PF12904 (PF13204)ER
880070.Cycma_2350PF16347 (PF00884)ER
880070.Cycma_3354(PF13472) (PF08840)ER
880070.Cycma_2684PF16347 (PF00884)ER
880070.Cycma_0892PF16347 (PF00884)ER
880070.Cycma_4185(PF08124) (PF02884)ER
880070.Cycma_1913PF16347 (PF00884)ER
880070.Cycma_2024(PF06283)ER
880070.Cycma_3998(PF12831)(ER)
880070.Cycma_2112(PF13472)ER
880070.Cycma_2115PF04734ER
880070.Cycma_3754(PF00884)ER
880070.Cycma_3752(PF13472)ER
880070.Cycma_4990PF17170ER
880070.Cycma_0946(PF13472)(mitochondrial)
880070.Cycma_3575(PF01408)(ER)
880070.Cycma_3574(PF06439)ER
880070.Cycma_3403(PF00884)ER
880070.Cycma_5067(PF05448)ER
880070.Cycma_1541PF14240ER
880070.Cycma_1582(PF00474)ER
880070.Cycma_0474PF04734ER
880070.Cycma_3199(PF07168)ER
880070.Cycma_1057(PF01663)ER
880070.Cycma_1904(PF08840)ER
880070.Cycma_2235(PF12831)ER
880070.Cycma_2236(PF13517)mitochondrial; (mitochondrial)
880070.Cycma_3691(PF00884)ER
880070.Cycma_1839PF17170ER
880070.Cycma_3984PF13088ER
880070.Cycma_1835(PF00884)ER
880070.Cycma_2762(PF06439)ER
880070.Cycma_4691(PF00884)ER
880070.Cycma_4690(PF00884)ER
880070.Cycma_3560(PF00474)ER
880070.Cycma_4329PF13088ER
880070.Cycma_5038(PF12831)ER
880070.Cycma_5039(PF12831)ER
880070.Cycma_5036(PF12831)ER
880070.Cycma_0466(PF01408)(mitochondrial)
880070.Cycma_0465(PF00474)ER
880070.Cycma_1482(PF13472)ER
880070.Cycma_0680(PF01408)(ER)
880070.Cycma_2683(PF06283)ER
880070.Cycma_3950(PF06439)(ER)
880070.Cycma_3959(PF01030)ER
880070.Cycma_3884(PF07995)ER
880070.Cycma_3883PF15892ER
880070.Cycma_3882(PF00884)(mitochondrial); mitochondrial
880070.Cycma_3557PF07632ER
880070.Cycma_3556(PF00884)ER
880070.Cycma_3555(PF00884)ER
880070.Cycma_3559(PF00884)ER
880070.Cycma_1532(PF01663)ER
880070.Cycma_4687(PF00884)(mitochondrial)
880070.Cycma_4685(PF00884)ER
880070.Cycma_4681(PF00884)mitochondrial
880070.Cycma_3796(PF09224)ER
880070.Cycma_3426(PF07940)ER
880070.Cycma_3428PF15892ER
880070.Cycma_4029(PF01408)mitochondrial; (mitochondrial)
880070.Cycma_0149(PF00884)ER
880070.Cycma_4050(PF06439)ER
880070.Cycma_1438(PF09113)ER
880070.Cycma_2967(PF14588)ER
880070.Cycma_2968(PF01758)ER
880070.Cycma_1818(PF06283)ER
880070.Cycma_3168(PF00474)ER
880070.Cycma_3768PF13088ER
880070.Cycma_3763(PF01408)(mitochondrial)
880070.Cycma_2787PF17170ER
880070.Cycma_4839(PF00884)ER
880070.Cycma_4831(PF00884)ER
880070.Cycma_2543(PF13472)ER
880070.Cycma_4331(PF01663)ER
880070.Cycma_3783(PF06439)ER
880070.Cycma_3430(PF07940)ER
880070.Cycma_0843(PF13229)ER
880070.Cycma_0845PF07632ER
880070.Cycma_5010(PF07995)ER
880070.Cycma_5011(PF12831)(mitochondrial)
880070.Cycma_5012(PF13472)ER
880070.Cycma_5013(PF00884)ER
880070.Cycma_2974(PF00884)ER
880070.Cycma_1173(PF06283)ER
880070.Cycma_3935(PF00884)ER
880070.Cycma_3934(PF00884)ER
880070.Cycma_4823(PF06283)ER
880070.Cycma_3338(PF07995)ER
880070.Cycma_4825(PF01408)ER
880070.Cycma_4223(PF07995)mitochondrial
880070.Cycma_4791(PF04253)ER
880070.Cycma_4001PF14240ER
880070.Cycma_0306(PF06439)ER
880070.Cycma_2708(PF06439)ER
880070.Cycma_0017(PF10142)ER
880070.Cycma_1545(PF06439)ER
880070.Cycma_2897(PF00884)ER
880070.Cycma_2891PF07632ER
880070.Cycma_3922(PF01663)ER
880070.Cycma_3923(PF06452)ER
880070.Cycma_2521(PF06452)ER
880070.Cycma_4673PF15892ER
880070.Cycma_4678(PF00884)ER
880070.Cycma_4849(PF07995)ER
880070.Cycma_3455(PF13229)ER
880070.Cycma_2540(PF06439)ER
880070.Cycma_0172PF13088ER
880070.Cycma_5075(PF00474)ER
880070.Cycma_1975(PF14588)ER
880070.Cycma_2958(PF01408)(mitochondrial)
880070.Cycma_2957(PF05448)ER
880070.Cycma_2401PF17170ER
880070.Cycma_3860(PF13472)(mitochondrial)
880070.Cycma_3916(PF07995)ER
880070.Cycma_3594(PF00884)ER
880070.Cycma_4247(PF13472)(ER)
880070.Cycma_4243PF16656ER
880070.Cycma_2625PF16656(mitochondrial)
880070.Cycma_3663(PF00884)ER
880070.Cycma_3662(PF00884)(mitochondrial)
880070.Cycma_5071(PF01408)ER
880070.Cycma_4062PF16401(ER)
880070.Cycma_4063(PF01408)ER; (ER)
880070.Cycma_4060(PF00884)ER
880070.Cycma_2040(PF04116)ER
880070.Cycma_0367(PF00474)ER
880070.Cycma_0100(PF13517)ER
880070.Cycma_5040(PF00884)ER
880070.Cycma_0612(PF04794)ER
880070.Cycma_1213(PF01758)ER
880070.Cycma_1215(PF00884)ER
880070.Cycma_1367(PF06439)ER
880070.Cycma_2989PF17170ER
880070.Cycma_1188(PF13472)ER
880070.Cycma_1181(PF00884)ER
880070.Cycma_1187(PF06452)ER
880070.Cycma_2436(PF13472)ER
880070.Cycma_2435PF13088ER
880070.Cycma_2434(PF00884)ER
880070.Cycma_2433PF13088ER
880070.Cycma_2432PF13088ER
880070.Cycma_2431(PF13472)ER
880070.Cycma_2430PF13088ER
880070.Cycma_2189PF16656ER
880070.Cycma_2188(PF13287)ER
880070.Cycma_2187(PF01541)(ER)
880070.Cycma_2186(PF01541)(ER)
880070.Cycma_2184(PF01541)ER; (ER)
880070.Cycma_1980(PF07995)ER
880070.Cycma_1986(PF01758)ER
880070.Cycma_1985(PF01758)ER
880070.Cycma_2051PF16656ER
880070.Cycma_3875(PF01758)ER
880070.Cycma_3693PF16656ER
880070.Cycma_3901(PF00884)ER
880070.Cycma_4909(PF13472)ER
880070.Cycma_3584(PF06241)mitochondrial
880070.Cycma_4271(PF00474)ER
880070.Cycma_3472PF16656ER
880070.Cycma_3673PF17170(mitochondrial)
880070.Cycma_1516(PF01408)ER
880070.Cycma_1519(PF13517)ER
880070.Cycma_1229(PF00884)ER
880070.Cycma_0608(PF13229)ER
880070.Cycma_1221(PF13472)ER
880070.Cycma_1353(PF13517)ER
880070.Cycma_1356(PF15071)ER
880070.Cycma_2042(PF07995)ER
880070.Cycma_2516(PF00884)ER
880070.Cycma_2045(PF14588)ER
880070.Cycma_2518(PF00884)ER
880070.Cycma_3805PF13088ER
880070.Cycma_2195PF14240ER
880070.Cycma_2197PF14240ER
880070.Cycma_3643(PF00884)ER
880070.Cycma_4047(PF06439)ER
880070.Cycma_4735(PF01408)mitochondrial; (mitochondrial)
880070.Cycma_0298(PF01663)ER
880070.Cycma_0902(PF00474)ER
880070.Cycma_1231PF04734ER
880070.Cycma_3815(PF00884)ER
880070.Cycma_3812(PF00474)ER
880070.Cycma_3810(PF01408)(ER)
880070.Cycma_3811(PF01408)(mitochondrial)
880070.Cycma_3491(PF13287)ER
880070.Cycma_4634(PF07995)mitochondrial
880070.Cycma_3658(PF07995)ER
880070.Cycma_3650(PF00884)ER
880070.Cycma_0136(PF00474)ER
880070.Cycma_1881(PF06439)ER
880070.Cycma_1247PF14240ER
880070.Cycma_2447(PF01541)(mitochondrial)
880070.Cycma_2444(PF01408)(mitochondrial)
880070.Cycma_2445(PF00474)ER
880070.Cycma_2060PF16656ER
880070.Cycma_2061PF13088ER
880070.Cycma_2062(PF04794)ER
880070.Cycma_2063PF13088ER
880070.Cycma_3006(PF00474)ER
880070.Cycma_3003(PF00884)ER
880070.Cycma_5037(PF00884)ER
880070.Cycma_4443PF16011ER
880070.Cycma_4445(PF01758)ER
880070.Cycma_3823(PF12831)ER
880070.Cycma_3825(PF00474)ER
880070.Cycma_3824(PF00884)ER
880070.Cycma_4845(PF06439)ER
880070.Cycma_2712(PF06439)ER
880070.Cycma_4710(PF06283)(mitochondrial)
880070.Cycma_3535(PF06439)ER
880070.Cycma_3539(PF13517)ER
880070.Cycma_4159PF13088ER; (ER)
880070.Cycma_0387PF13088ER
880070.Cycma_0382(PF00474)ER
880070.Cycma_0728(PF14099)(ER); ER
880070.Cycma_1255(PF06439)ER
880070.Cycma_2878(PF08840)(mitochondrial)
880070.Cycma_2473PF07632ER
880070.Cycma_2010PF17170ER
880070.Cycma_4436(PF00884)ER
880070.Cycma_3835(PF13472)ER; (ER)
880070.Cycma_2495(PF07940)ER
880070.Cycma_2496(PF12006)ER
880070.Cycma_4895(PF05448)ER
880070.Cycma_4890(PF06439)ER
880070.Cycma_2722(PF12006)ER
880070.Cycma_3638(PF06283)ER
880070.Cycma_2720(PF04116)(ER)
880070.Cycma_3637PF13854ER
880070.Cycma_3633PF17170ER
880070.Cycma_4160(PF13229)ER
880070.Cycma_4169(PF13472)ER
880070.Cycma_0734(PF14099)ER
880070.Cycma_0730(PF14099)ER
880070.Cycma_1266(PF07995)ER
880070.Cycma_2451(PF01541)(mitochondrial)
880070.Cycma_1840PF17170ER
880070.Cycma_3733PF13088ER
880070.Cycma_3357PF04734ER
880070.Cycma_3356(PF06439)ER
880070.Cycma_3359PF15892ER
880070.Cycma_4080(PF13472)ER
880070.Cycma_0412PF04734ER
880070.Cycma_0411PF04734ER
880070.Cycma_1475(PF06452)ER
880070.Cycma_1297(PF00884)ER
880070.Cycma_1747(PF03625)ER
880070.Cycma_2030(PF01408)ER; (mitochondrial)
880070.Cycma_3611(PF06452)ER
880070.Cycma_4966(PF00474)ER
880070.Cycma_4965(PF01408)(mitochondrial)
880070.Cycma_4184(PF00884)ER
880070.Cycma_1132(PF13472)ER
880070.Cycma_3558(PF07940)ER
880070.Cycma_2245PF14240ER
880070.Cycma_2246(PF04116)ER; (ER)
880070.Cycma_1629(PF00474)ER
880070.Cycma_2931(PF01408)ER; (ER)
880070.Cycma_3755PF16347 (PF00884)
880070.Cycma_0199(PF01408)(plastid)
880070.Cycma_0852PF16347 (PF00884)
880070.Cycma_3766(PF01408)(ER)
880070.Cycma_3767(PF12831)(mitochondrial)
880070.Cycma_0847(PF05448)ER
880070.Cycma_4002(PF00884)(ER)
880070.Cycma_0307(PF01408)(mitochondrial)
880070.Cycma_2900(PF00884)(ER)
880070.Cycma_2881(PF10013)(mitochondrial); not used
880070.Cycma_2956(PF01408)(ER)
880070.Cycma_4733(PF01408)(ER)
880070.Cycma_4852(PF00474)(plastid)
880070.Cycma_2871(PF04116)(ER)
880070.Cycma_0938(PF13517) (PF07593)
880070.Cycma_4889(PF01408)(mitochondrial)
880070.Cycma_1612PF12904 (PF13204)
880070.Cycma_1294(PF14588)(ER)
880070.Cycma_2032(PF01408)(mitochondrial)
880070.Cycma_4577(PF03625)
880070.Cycma_0058(PF13472)
880070.Cycma_0181PF16401
880070.Cycma_3873(PF04116)
880070.Cycma_2903(PF13229)
880070.Cycma_3988(PF01541)
880070.Cycma_3567(PF01541)
880070.Cycma_0867(PF03522)
880070.Cycma_0037(PF01408)
880070.Cycma_3551(PF01408)
880070.Cycma_1145(PF01541)
880070.Cycma_1141(PF04519)
880070.Cycma_3169(PF05153)
880070.Cycma_3761PF15892
880070.Cycma_3894(PF07940)
880070.Cycma_3892(PF12831)
880070.Cycma_3542(PF06439)
880070.Cycma_3789(PF12831)
880070.Cycma_4300(PF02171)
880070.Cycma_4657(PF01758)
880070.Cycma_2203(PF12681)
880070.Cycma_1178(PF13517)
880070.Cycma_0166PF04734
880070.Cycma_0162(PF01408)
880070.Cycma_1546(PF01408)
880070.Cycma_1766(PF12681)
880070.Cycma_4679(PF00884)
880070.Cycma_4844(PF01408)
880070.Cycma_0793(PF04519)
880070.Cycma_4101(PF04116)
880070.Cycma_3043(PF04116)
880070.Cycma_0105PF17170
880070.Cycma_0101PF16401
880070.Cycma_1363(PF01408)
880070.Cycma_2185(PF01541)
880070.Cycma_2183(PF01541)
880070.Cycma_2507(PF04116)
880070.Cycma_3697(PF01408)
880070.Cycma_4275(PF01408)
880070.Cycma_4879PF16401
880070.Cycma_4051(PF01408)
880070.Cycma_4058(PF16314)
880070.Cycma_0808(PF04519)
880070.Cycma_0772(PF01408)
880070.Cycma_0374(PF03625)
880070.Cycma_0574(PF13229)
880070.Cycma_1357(PF01663)
880070.Cycma_2043PF16011
880070.Cycma_4590(PF03625)
880070.Cycma_4591(PF03625)
880070.Cycma_4046(PF01408)
880070.Cycma_4734(PF01408)
880070.Cycma_3649(PF00884)
880070.Cycma_4730(PF01408)
880070.Cycma_5081(PF06176)
880070.Cycma_1232(PF13472)
880070.Cycma_2450(PF01541)
880070.Cycma_2452(PF01541)
880070.Cycma_4709(PF01408)
880070.Cycma_0357(PF13964)
880070.Cycma_4039(PF12831)
880070.Cycma_1884(PF01408)
880070.Cycma_2448(PF01541)
880070.Cycma_2449(PF01541)
880070.Cycma_3826(PF12831)
880070.Cycma_3537(PF01408)
880070.Cycma_3538(PF00884)
880070.Cycma_0384PF13088
880070.Cycma_0388(PF01408)
880070.Cycma_3842(PF01408)
880070.Cycma_4896(PF12831)
880070.Cycma_2723(PF13517)
880070.Cycma_0390(PF01408)
880070.Cycma_0935(PF01408)
880070.Cycma_1604(PF00884)
880070.Cycma_2469(PF13517)
880070.Cycma_3358(PF06283)
880070.Cycma_4778(PF04794)
880070.Cycma_0410(PF07940)
880070.Cycma_1618(PF02689)
880070.Cycma_2812(PF13875)
880070.Cycma_3348(PF04519)
880070.Cycma_4969(PF01408)
880070.Cycma_1592PF14240
880070.Cycma_1624(PF01408)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================