Metamenu

Effective results for Synechococcus sp. PCC 7335 (eggnog40)

Summary

Number of putative secreted proteins: 385
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 151 eukaryotic-like domains, contained in 385 proteins (89 high, 296 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
91464.S7335_5145(PF16639) (PF01333)(ER)
91464.S7335_1767(PF00924) (PF00610)mitochondrial
91464.S7335_5553(PF00060) (PF07885)mitochondrial
91464.S7335_4901(PF12770) (PF13176)ER
91464.S7335_3895(PF04278)ER
91464.S7335_257(PF03022)ER
91464.S7335_412(PF00924)ER
91464.S7335_2559(PF13301)ER
91464.S7335_851(PF00805)(mitochondrial)
91464.S7335_1601(PF00737)(mitochondrial)
91464.S7335_4397PF01007mitochondrial
91464.S7335_4391(PF11016)ER
91464.S7335_3810(PF00924)ER
91464.S7335_3152(PF00924)ER
91464.S7335_3738(PF02941)(mitochondrial)
91464.S7335_2464(PF11152)(ER)
91464.S7335_764(PF00805)(mitochondrial); (plastid)
91464.S7335_570(PF03022)ER
91464.S7335_4273PF00124ER
91464.S7335_5408(PF13301)ER
91464.S7335_4830(PF00421)(mitochondrial)
91464.S7335_1214(PF12770)ER
91464.S7335_533(PF03022)ER
91464.S7335_2916(PF00805)ER
91464.S7335_4784PF01716ER
91464.S7335_4998(PF12770)ER
91464.S7335_2480PF07082(mitochondrial)
91464.S7335_5377(PF07444)ER
91464.S7335_2014(PF10693)ER
91464.S7335_2717(PF00805)(mitochondrial)
91464.S7335_3008(PF10664)(mitochondrial)
91464.S7335_2038(PF00805)ER
91464.S7335_782(PF12770)ER
91464.S7335_4285(PF00924)mitochondrial
91464.S7335_3909PF13469(mitochondrial)
91464.S7335_1967PF05996mitochondrial; (mitochondrial)
91464.S7335_420(PF00042)mitochondrial; (mitochondrial)
91464.S7335_5187(PF01169)ER
91464.S7335_57(PF00231)(mitochondrial); mitochondrial
91464.S7335_2133(PF12049)(ER)
91464.S7335_2689(PF01169)ER
91464.S7335_5231(PF12046)ER
91464.S7335_1471(PF01789)ER
91464.S7335_619PF01007(ER)
91464.S7335_449(PF00924)ER
91464.S7335_3767(PF07593)ER
91464.S7335_4690(PF16166)ER
91464.S7335_1633(PF12770)ER
91464.S7335_1843PF05996(mitochondrial)
91464.S7335_3222(PF00060) (PF07885)(ER)
91464.S7335_757(PF12770)ER
91464.S7335_4101(PF01947)(mitochondrial); (plastid)
91464.S7335_4820(PF13355)ER; (ER)
91464.S7335_3474(PF07444)ER
91464.S7335_2929(PF11317)ER
91464.S7335_4490(PF03652)ER
91464.S7335_3648(PF12770)ER
91464.S7335_3317PF02672(mitochondrial); plastid
91464.S7335_4141(PF00924)ER
91464.S7335_1229(PF00805)ER
91464.S7335_5307PF01716ER
91464.S7335_3146(PF00924)ER
91464.S7335_2003(PF13646)(ER)
91464.S7335_1723PF13469(ER)
91464.S7335_2764(PF07593)ER
91464.S7335_3010(PF03647)ER
91464.S7335_2949(PF10716)ER
91464.S7335_3378(PF06514)ER
91464.S7335_2022(PF01590)(mitochondrial)
91464.S7335_2023(PF00805)(ER); (mitochondrial)
91464.S7335_5139PF02507ER
91464.S7335_4415(PF00101)(mitochondrial)
91464.S7335_2516(PF13301)ER
91464.S7335_4600(PF07885)ER
91464.S7335_2187(PF12770)mitochondrial
91464.S7335_5437(PF13326)ER
91464.S7335_4471(PF00231)(mitochondrial); mitochondrial
91464.S7335_5076(PF07885)ER
91464.S7335_3917(PF12770)ER
91464.S7335_4595(PF01737)ER
91464.S7335_647(PF00805)(mitochondrial); (plastid)
91464.S7335_5047PF00124ER
91464.S7335_1524(PF12770) (PF13176)
91464.S7335_4005(PF00924)(plastid)
91464.S7335_3521PF13469(plastid)
91464.S7335_1812(PF13518) (PF13592)
91464.S7335_4573(PF04483)(mitochondrial)
91464.S7335_2363(PF13646) (PF03130)
91464.S7335_1725(PF09364) (PF03894)
91464.S7335_4969(PF13176)(mitochondrial)
91464.S7335_5602(PF02468)ER; not used
91464.S7335_3716(PF00360) (PF01590)
91464.S7335_1446(PF06298)ER; not used
91464.S7335_2124PF02985 (PF13646)
91464.S7335_4839(PF13518) (PF13592)
91464.S7335_1020(PF13438)(plastid)
91464.S7335_2784(PF09364) (PF03894)
91464.S7335_1739(PF01169)(ER)
91464.S7335_2716(PF13518) (PF13592)
91464.S7335_5357PF13469(mitochondrial)
91464.S7335_3847(PF13646) (PF03130)
91464.S7335_955(PF13438)(plastid)
91464.S7335_3021(PF00283)(ER); not used
91464.S7335_1360(PF08854)(plastid)
91464.S7335_4282PF02985 (PF13646)
91464.S7335_1346(PF00360) (PF01590)
91464.S7335_1345(PF00924)plastid
91464.S7335_3060(PF00421)(ER)
91464.S7335_4337(PF00360) (PF01590)
91464.S7335_1519(PF05969)ER; not used
91464.S7335_5210(PF02427)(mitochondrial)
91464.S7335_387(PF09364) (PF03894)
91464.S7335_840(PF02796)(plastid)
91464.S7335_4019PF01701ER; not used
91464.S7335_3763(PF00805) (PF12770)
91464.S7335_4735PF00685(ER)
91464.S7335_5381(PF11805)(ER)
91464.S7335_1386(PF00796)ER; not used
91464.S7335_987(PF13604)(plastid)
91464.S7335_4102(PF01590)(mitochondrial)
91464.S7335_3478(PF00284) (PF00283)
91464.S7335_3865(PF00924)(plastid)
91464.S7335_5116(PF11909)(mitochondrial)
91464.S7335_1931(PF13518) (PF13592)
91464.S7335_4296(PF13518) (PF13592)
91464.S7335_3216(PF13646) (PF03130)
91464.S7335_3212(PF00283)(ER); not used
91464.S7335_2300PF13469(mitochondrial)
91464.S7335_1359(PF02392)(ER)
91464.S7335_4906PF02985 (PF13646)
91464.S7335_5198PF01701ER; not used
91464.S7335_2322PF01839
91464.S7335_1330(PF03040)
91464.S7335_5529PF13469
91464.S7335_1528PF00124
91464.S7335_5201(PF00076)
91464.S7335_2695(PF11267)
91464.S7335_2344(PF00042)
91464.S7335_1644(PF08855)
91464.S7335_4945(PF01590)
91464.S7335_4943(PF11360)
91464.S7335_3753(PF00421)
91464.S7335_3751(PF00076)
91464.S7335_3754(PF12770)
91464.S7335_1817PF10162
91464.S7335_1101(PF12894)
91464.S7335_5489(PF00762)
91464.S7335_55(PF13495)
91464.S7335_620(PF00805)
91464.S7335_2362PF01839
91464.S7335_3199(PF03092)
91464.S7335_4517(PF11910)
91464.S7335_5601(PF01590)
91464.S7335_3562PF05996
91464.S7335_2162(PF08853)
91464.S7335_1469(PF01590)
91464.S7335_2837(PF01590)
91464.S7335_814(PF02796)
91464.S7335_1096(PF01400)
91464.S7335_1097(PF13495)
91464.S7335_4390(PF09366)
91464.S7335_3548(PF13646)
91464.S7335_3549(PF01590)
91464.S7335_558PF03982
91464.S7335_1441PF02419not used
91464.S7335_1444PF00124
91464.S7335_3488(PF10999)
91464.S7335_4709(PF04983)
91464.S7335_2287(PF02531)
91464.S7335_3730PF13469
91464.S7335_573(PF00042)
91464.S7335_576(PF02696)
91464.S7335_5095PF01839
91464.S7335_2264PF06888
91464.S7335_2408(PF01590)
91464.S7335_2406(PF02605)
91464.S7335_1984PF13225
91464.S7335_355(PF00421)
91464.S7335_350PF01839
91464.S7335_3522(PF01590)
91464.S7335_3679PF05204
91464.S7335_2679(PF07593)
91464.S7335_2098(PF06485)
91464.S7335_1407(PF13604)
91464.S7335_5(PF00762)
91464.S7335_1(PF00762)
91464.S7335_728PF08802
91464.S7335_2659(PF11623)
91464.S7335_2652(PF13646)
91464.S7335_1686(PF13646)
91464.S7335_1689PF00685
91464.S7335_1688(PF13911)
91464.S7335_1025(PF00413)
91464.S7335_5143(PF13176)
91464.S7335_3464(PF03652)
91464.S7335_3468(PF11998)
91464.S7335_4810(PF10674)
91464.S7335_4812PF00685
91464.S7335_3106PF00685
91464.S7335_288(PF13592)not used
91464.S7335_286(PF01590)
91464.S7335_4319(PF12204)
91464.S7335_95(PF02796)
91464.S7335_91(PF00805)
91464.S7335_2758(PF12617)
91464.S7335_2759(PF11378)
91464.S7335_2752(PF11347)
91464.S7335_2504(PF14159)
91464.S7335_2970(PF12770)
91464.S7335_3619(PF01590)
91464.S7335_2562(PF01590)
91464.S7335_3960PF13469
91464.S7335_3963(PF02533)not used
91464.S7335_130(PF02796)
91464.S7335_348(PF01590)
91464.S7335_2773(PF13604)
91464.S7335_2771(PF02605)
91464.S7335_2951PF01839
91464.S7335_1279(PF13438)
91464.S7335_1900(PF00805)
91464.S7335_5378(PF04983)
91464.S7335_5591(PF02696)
91464.S7335_5595(PF13646)
91464.S7335_4424(PF00421)
91464.S7335_3363(PF13604)
91464.S7335_2548PF00124
91464.S7335_487PF02136
91464.S7335_3949(PF07958)
91464.S7335_157PF00124
91464.S7335_5295(PF00805)
91464.S7335_5126(PF00076)
91464.S7335_5125(PF02529)not used
91464.S7335_4652PF02005
91464.S7335_2712(PF00504)not used
91464.S7335_3114(PF11341)
91464.S7335_1926(PF00805)
91464.S7335_2791PF02136
91464.S7335_4405(PF13646)
91464.S7335_4546PF02672
91464.S7335_2525PF00685
91464.S7335_178(PF00805)
91464.S7335_1719(PF06799)
91464.S7335_34PF01839
91464.S7335_4090(PF11264)
91464.S7335_2731(PF00094)
91464.S7335_722PF02672
91464.S7335_4287(PF00504)not used
91464.S7335_193(PF01590)
91464.S7335_1080(PF12770)
91464.S7335_4072(PF02943)
91464.S7335_5063(PF00805)
91464.S7335_3691(PF00504)
91464.S7335_1579(PF01590)
91464.S7335_5275(PF13176)
91464.S7335_4059PF02507
91464.S7335_3200(PF07593)
91464.S7335_4338PF00685
91464.S7335_4487PF13469
91464.S7335_2332PF08802
91464.S7335_655PF02136
91464.S7335_249(PF01590)
91464.S7335_3658(PF06206)
91464.S7335_4933(PF01590)
91464.S7335_409(PF00924)
91464.S7335_1093(PF12894)
91464.S7335_1091(PF13604)
91464.S7335_5215PF08802
91464.S7335_5213(PF00924)
91464.S7335_3266(PF01590)
91464.S7335_2352(PF06206)
91464.S7335_3881(PF00805)
91464.S7335_3885(PF01590)
91464.S7335_679(PF13495)
91464.S7335_1821PF00685
91464.S7335_585(PF00805)
91464.S7335_5493PF10162
91464.S7335_3247(PF14159)
91464.S7335_3530(PF01590)
91464.S7335_3535(PF04481)
91464.S7335_1475(PF06206)
91464.S7335_1492PF12873
91464.S7335_610(PF01400)
91464.S7335_1677PF05996
91464.S7335_1678PF00223
91464.S7335_5005(PF11965)
91464.S7335_4754(PF06596)not used
91464.S7335_4203(PF13438)
91464.S7335_4758(PF11918)
91464.S7335_4975(PF10063)
91464.S7335_2580(PF00101)
91464.S7335_1802(PF02341)
91464.S7335_1116(PF02796)
91464.S7335_2507(PF00805)
91464.S7335_2053(PF00042)
91464.S7335_1613(PF00076)
91464.S7335_2829(PF11282)
91464.S7335_5575(PF08847)
91464.S7335_5574(PF06485)
91464.S7335_1289PF13469
91464.S7335_1133(PF00805)
91464.S7335_321(PF02796)
91464.S7335_4506(PF13646)
91464.S7335_3570(PF11965)
91464.S7335_2623PF00124
91464.S7335_4736PF01007
91464.S7335_4732(PF16095)
91464.S7335_2841(PF05542)
91464.S7335_4864(PF01590)
91464.S7335_777(PF00231)
91464.S7335_4522PF13469
91464.S7335_4382(PF12471)
91464.S7335_3558(PF00805)
91464.S7335_3223(PF04455)
91464.S7335_3225(PF12095)
91464.S7335_2861(PF13495)
91464.S7335_3125(PF00413)
91464.S7335_3122(PF12600)
91464.S7335_2471(PF00924)
91464.S7335_2474(PF11833)
91464.S7335_1177(PF13604)
91464.S7335_1172(PF00805)
91464.S7335_3829(PF00805)
91464.S7335_2667(PF09353)
91464.S7335_2880(PF00805)
91464.S7335_3454(PF02532)not used
91464.S7335_1991PF07082
91464.S7335_508(PF00805)
91464.S7335_507(PF02796)
91464.S7335_1697(PF13646)
91464.S7335_1690PF02672
91464.S7335_882(PF02796)
91464.S7335_4809PF01839
91464.S7335_2922(PF00101)
91464.S7335_4592PF00685
91464.S7335_4329PF00223
91464.S7335_4491(PF00805)
91464.S7335_527(PF01590)
91464.S7335_524PF00124
91464.S7335_3312PF00223
91464.S7335_297(PF00805)
91464.S7335_4309(PF07885)
91464.S7335_3333(PF10184)
91464.S7335_3433(PF02696)
91464.S7335_3290(PF12452)
91464.S7335_2793(PF05421)
91464.S7335_5363PF10162
91464.S7335_5585PF00685
91464.S7335_4180(PF14249)
91464.S7335_4988(PF01590)
91464.S7335_2555(PF07593)
91464.S7335_2005(PF00762)
91464.S7335_2007(PF01590)
91464.S7335_4247PF13469
91464.S7335_2761(PF03522)
91464.S7335_2769PF01839
91464.S7335_926(PF00413)
91464.S7335_494(PF00305)
91464.S7335_22PF01839
91464.S7335_21PF01839
91464.S7335_2707(PF01788)not used
91464.S7335_2706(PF12527)
91464.S7335_2709(PF12770)
91464.S7335_4606(PF00076)
91464.S7335_4602PF13469
91464.S7335_2185PF13469
91464.S7335_2986(PF05542)
91464.S7335_4478(PF11947)
91464.S7335_4253PF00124
91464.S7335_3919(PF11210)
91464.S7335_2069PF03982
91464.S7335_2066(PF12770)
91464.S7335_3217(PF09366)
91464.S7335_45(PF00101)not used
91464.S7335_1978PF13469
91464.S7335_644(PF13495)
91464.S7335_640PF13469
91464.S7335_5042(PF01590)
91464.S7335_5516(PF13646)
91464.S7335_233PF10162
91464.S7335_4456(PF00805)
91464.S7335_5506PF00223
91464.S7335_1502PF01839
91464.S7335_5194(PF08417)
91464.S7335_5190(PF07885)
91464.S7335_394(PF01590)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================