Metamenu

Effective results for Clostridium methylpentosum DSM 5476 (eggnog40)

Summary

Number of putative secreted proteins: 177
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 177 proteins (99 high, 78 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
537013.CLOSTMETH_03627PF08531 PF00754 (PF12733) PF05592ER
537013.CLOSTMETH_00810PF08531 PF00754 PF05592ER
537013.CLOSTMETH_00813PF00754 PF14498 (PF13290)ER
537013.CLOSTMETH_03342PF00754 PF14498 (PF13290)ER
537013.CLOSTMETH_00911PF08531 PF00754 PF05592ER
537013.CLOSTMETH_02076PF00754 PF14498 (PF13290)ER; (ER)
537013.CLOSTMETH_01630PF08531 PF00754 PF05592ER
537013.CLOSTMETH_03558PF08531 PF00754 PF05592ER
537013.CLOSTMETH_00848PF08531 PF00754 PF05592ER
537013.CLOSTMETH_00151PF00754 PF05592ER
537013.CLOSTMETH_02949PF00754 PF05592ER
537013.CLOSTMETH_02944PF08531 PF05592(ER)
537013.CLOSTMETH_02941PF00754 PF14498ER
537013.CLOSTMETH_00586PF08531 PF05592ER
537013.CLOSTMETH_00581PF08531 PF05592ER
537013.CLOSTMETH_00806PF08531 PF05592ER
537013.CLOSTMETH_02055PF08531 PF05592ER
537013.CLOSTMETH_03645PF08531 PF05592ER
537013.CLOSTMETH_03801PF08531 PF05592ER
537013.CLOSTMETH_02043PF08531 PF05592mitochondrial
537013.CLOSTMETH_02958PF08531 PF05592ER
537013.CLOSTMETH_00748PF00754 PF05592ER; (ER)
537013.CLOSTMETH_00292PF00754 PF14498mitochondrial; (mitochondrial)
537013.CLOSTMETH_03816PF08531 PF05592ER
537013.CLOSTMETH_03711PF08531 PF05592ER
537013.CLOSTMETH_02845PF08531 PF05592ER
537013.CLOSTMETH_03821PF08531 PF05592ER
537013.CLOSTMETH_03829PF08531 PF05592ER
537013.CLOSTMETH_01894PF00754 (PF13290)ER; (ER)
537013.CLOSTMETH_00725PF08531 PF05592(mitochondrial)
537013.CLOSTMETH_01386PF00754 PF17132ER
537013.CLOSTMETH_03834PF08531 PF05592ER
537013.CLOSTMETH_03739PF08531 PF00754 PF05592(ER)
537013.CLOSTMETH_01595PF00754 (PF13290)ER; (ER)
537013.CLOSTMETH_02937PF08531 PF05592ER
537013.CLOSTMETH_03564PF00754 PF17132ER
537013.CLOSTMETH_03764PF00754 PF14498(ER); ER
537013.CLOSTMETH_03545PF00754 PF17132(ER)
537013.CLOSTMETH_03549PF00754 PF17132ER
537013.CLOSTMETH_02963PF00754 PF14498ER
537013.CLOSTMETH_00846PF08531 PF05592ER
537013.CLOSTMETH_00843PF08531 PF05592ER
537013.CLOSTMETH_02372PF14498ER
537013.CLOSTMETH_02970PF17132ER
537013.CLOSTMETH_00943PF14498ER
537013.CLOSTMETH_03337PF00754ER
537013.CLOSTMETH_03842PF17132(ER); (mitochondrial)
537013.CLOSTMETH_03144(PF01554)(ER)
537013.CLOSTMETH_03858(PF01381)(mitochondrial)
537013.CLOSTMETH_03041PF17132ER
537013.CLOSTMETH_00554(PF01554)(ER)
537013.CLOSTMETH_03055PF17132mitochondrial
537013.CLOSTMETH_03053PF05592ER
537013.CLOSTMETH_01366(PF01381)(mitochondrial); mitochondrial
537013.CLOSTMETH_02982PF17132ER
537013.CLOSTMETH_02987PF17132(ER)
537013.CLOSTMETH_00745PF00754 PF17132(mitochondrial)
537013.CLOSTMETH_03878(PF03590)ER
537013.CLOSTMETH_02054PF08531 PF00754 PF05592
537013.CLOSTMETH_02059PF17132ER
537013.CLOSTMETH_00114PF17132ER
537013.CLOSTMETH_01912PF17132ER
537013.CLOSTMETH_00120PF17132ER
537013.CLOSTMETH_00122PF17132ER
537013.CLOSTMETH_03813(PF01554)ER; (ER)
537013.CLOSTMETH_01888PF08531 PF00754 PF05592
537013.CLOSTMETH_03255PF08531 PF05592(mitochondrial)
537013.CLOSTMETH_03003PF17132ER
537013.CLOSTMETH_00754PF14498ER
537013.CLOSTMETH_03622(PF00112)ER
537013.CLOSTMETH_01660(PF01381)(mitochondrial)
537013.CLOSTMETH_00920PF17132ER
537013.CLOSTMETH_02065PF17132ER
537013.CLOSTMETH_01890PF17132ER
537013.CLOSTMETH_03632(PF01554)ER
537013.CLOSTMETH_00549PF17132ER
537013.CLOSTMETH_03602PF08531 PF00754 PF05592
537013.CLOSTMETH_01267(PF01381)mitochondrial; (mitochondrial)
537013.CLOSTMETH_01609PF17132ER
537013.CLOSTMETH_03036PF05592ER
537013.CLOSTMETH_01618PF17132ER
537013.CLOSTMETH_01612PF17132ER
537013.CLOSTMETH_01614PF17132ER
537013.CLOSTMETH_01915PF17132ER
537013.CLOSTMETH_01911PF17132(mitochondrial)
537013.CLOSTMETH_01599PF17132ER
537013.CLOSTMETH_01908PF17132(ER)
537013.CLOSTMETH_01906PF17132ER
537013.CLOSTMETH_02763PF17132ER
537013.CLOSTMETH_03543PF05592(mitochondrial)
537013.CLOSTMETH_03431PF17132ER
537013.CLOSTMETH_02965PF17132ER; (ER)
537013.CLOSTMETH_02975PF08531 PF05592
537013.CLOSTMETH_03339PF00754 PF14498
537013.CLOSTMETH_01699(PF01381)(mitochondrial)
537013.CLOSTMETH_02048PF17132(ER)
537013.CLOSTMETH_00758PF00754 (PF13290)
537013.CLOSTMETH_03016(PF01554)(mitochondrial)
537013.CLOSTMETH_03709PF00754 PF17132
537013.CLOSTMETH_03031PF17132(mitochondrial)
537013.CLOSTMETH_03293(PF02421)(mitochondrial)
537013.CLOSTMETH_01621PF08531 PF05592
537013.CLOSTMETH_03556PF17132(plastid)
537013.CLOSTMETH_01928(PF12733) (PF00112)
537013.CLOSTMETH_03233(PF01991)
537013.CLOSTMETH_00336(PF01381)
537013.CLOSTMETH_03847(PF02421)
537013.CLOSTMETH_02418(PF01381)
537013.CLOSTMETH_00238(PF01381)
537013.CLOSTMETH_00491(PF07247)
537013.CLOSTMETH_01165(PF01381)
537013.CLOSTMETH_02947(PF01381)
537013.CLOSTMETH_02943PF00754
537013.CLOSTMETH_00827(PF12437)
537013.CLOSTMETH_00826(PF03590)
537013.CLOSTMETH_03686PF00754
537013.CLOSTMETH_00226(PF01381)
537013.CLOSTMETH_03666(PF01381)
537013.CLOSTMETH_03665(PF01381)
537013.CLOSTMETH_03663(PF01381)
537013.CLOSTMETH_01197(PF01381)
537013.CLOSTMETH_03914(PF01381)
537013.CLOSTMETH_03915(PF01381)
537013.CLOSTMETH_03916(PF01381)
537013.CLOSTMETH_03917(PF01381)
537013.CLOSTMETH_03862(PF01554)
537013.CLOSTMETH_01257(PF12681)
537013.CLOSTMETH_02500(PF01381)
537013.CLOSTMETH_03585(PF01381)
537013.CLOSTMETH_01694(PF01381)
537013.CLOSTMETH_00974(PF01381)
537013.CLOSTMETH_00972(PF01381)not used
537013.CLOSTMETH_00971(PF01381)
537013.CLOSTMETH_00970(PF01381)
537013.CLOSTMETH_02186(PF12681)
537013.CLOSTMETH_03877(PF12437)
537013.CLOSTMETH_02518(PF01554)
537013.CLOSTMETH_01516(PF01381)not used
537013.CLOSTMETH_01347(PF01381)
537013.CLOSTMETH_00607(PF02421)
537013.CLOSTMETH_02998PF17132
537013.CLOSTMETH_02992PF17132
537013.CLOSTMETH_02990PF17132
537013.CLOSTMETH_00908(PF01381)
537013.CLOSTMETH_01431(PF01554)
537013.CLOSTMETH_02702(PF01381)
537013.CLOSTMETH_03623(PF12733)
537013.CLOSTMETH_03010(PF14311)
537013.CLOSTMETH_02380PF00754
537013.CLOSTMETH_03701PF17132
537013.CLOSTMETH_02723(PF01554)
537013.CLOSTMETH_03630(PF01381)
537013.CLOSTMETH_01700(PF01381)
537013.CLOSTMETH_01707(PF01381)
537013.CLOSTMETH_01706(PF01381)
537013.CLOSTMETH_01705(PF01381)
537013.CLOSTMETH_02010(PF01381)
537013.CLOSTMETH_02730(PF01554)
537013.CLOSTMETH_00641(PF01554)
537013.CLOSTMETH_01266(PF01381)not used
537013.CLOSTMETH_02130(PF01554)
537013.CLOSTMETH_02255(PF01554)
537013.CLOSTMETH_02256(PF01554)not used
537013.CLOSTMETH_01766(PF01381)
537013.CLOSTMETH_00092(PF01554)
537013.CLOSTMETH_03296(PF02421)
537013.CLOSTMETH_02754(PF01381)
537013.CLOSTMETH_02691(PF01381)
537013.CLOSTMETH_03568PF00754
537013.CLOSTMETH_01454(PF01381)
537013.CLOSTMETH_01804PF17132
537013.CLOSTMETH_01153(PF01381)
537013.CLOSTMETH_01154(PF01381)
537013.CLOSTMETH_02911(PF01554)
537013.CLOSTMETH_02364(PF01381)
537013.CLOSTMETH_00524(PF01554)
537013.CLOSTMETH_00525(PF01554)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================