Effective results for Prevotella buccalis ATCC 35310 (eggnog40)

Summary

Number of putative secreted proteins: 59
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 59 proteins (1 high, 58 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
679190.HMPREF0650_0734				(PF12972) (PF12971) (PF05089)	ER
679190.HMPREF0650_0735				(PF12972) (PF12971) (PF05089)	ER
679190.HMPREF0650_0972				(PF13173)	(mitochondrial)
679190.HMPREF0650_0177				(PF13415)	ER
679190.HMPREF0650_0085				(PF13905)	ER
679190.HMPREF0650_0957				(PF07971)	ER
679190.HMPREF0650_0335				(PF03432)	mitochondrial
679190.HMPREF0650_2302				(PF03663)	ER
679190.HMPREF0650_1099				(PF07971)	ER
679190.HMPREF0650_0768				(PF03663)	ER
679190.HMPREF0650_0543				(PF13905)	ER
679190.HMPREF0650_2217				(PF05686)	mitochondrial
679190.HMPREF0650_0643				(PF07971)	ER
679190.HMPREF0650_0489				(PF13905)	ER
679190.HMPREF0650_1455				(PF07971)	ER
679190.HMPREF0650_1285				(PF03051)	(mitochondrial); (plastid)
679190.HMPREF0650_2066				(PF11175)	ER
679190.HMPREF0650_2062				(PF11175)	ER
679190.HMPREF0650_0032				(PF07971)	ER
679190.HMPREF0650_0031				(PF04450)	ER
679190.HMPREF0650_0030				(PF07971)	ER
679190.HMPREF0650_1939				(PF07971)	ER
679190.HMPREF0650_0756				(PF02971) (PF07837)
679190.HMPREF0650_0157				(PF13155) (PF01807)
679190.HMPREF0650_1557				(PF13155) (PF01807)
679190.HMPREF0650_0337				(PF13155) (PF01807)
679190.HMPREF0650_1300				(PF13155) (PF01807)
679190.HMPREF0650_1434				(PF03051)	(mitochondrial)
679190.HMPREF0650_0908				(PF13173)	(mitochondrial)
679190.HMPREF0650_2359				(PF03432)	(mitochondrial)
679190.HMPREF0650_2222				(PF13905)	(ER)
679190.HMPREF0650_2114				(PF01715)	(mitochondrial)
679190.HMPREF0650_1119				(PF13173)
679190.HMPREF0650_0405				(PF05693)
679190.HMPREF0650_2052				(PF13173)
679190.HMPREF0650_1580				(PF11175)
679190.HMPREF0650_1565				(PF05970)
679190.HMPREF0650_1355				(PF03630)
679190.HMPREF0650_0952				(PF13155)
679190.HMPREF0650_0775				(PF16314)
679190.HMPREF0650_0793				(PF05970)
679190.HMPREF0650_0791				(PF01715)
679190.HMPREF0650_2038				(PF06250)	not used
679190.HMPREF0650_0549				(PF13173)
679190.HMPREF0650_0148				(PF13173)
679190.HMPREF0650_0434				(PF06250)
679190.HMPREF0650_1158				(PF13173)
679190.HMPREF0650_1529				(PF06250)
679190.HMPREF0650_0144				(PF13155)
679190.HMPREF0650_0328				(PF03432)
679190.HMPREF0650_1318				(PF03432)
679190.HMPREF0650_0686				(PF03432)
679190.HMPREF0650_2423				(PF16011)
679190.HMPREF0650_1840				(PF03051)
679190.HMPREF0650_0835				PF16269
679190.HMPREF0650_2277				(PF13173)
679190.HMPREF0650_1741				(PF06250)
679190.HMPREF0650_0346				(PF13173)
679190.HMPREF0650_0955				(PF03432)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================