Metamenu

Effective results for Bacteroides fluxus YIT 12057 (eggnog40)

Summary

Number of putative secreted proteins: 212
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 60 eukaryotic-like domains, contained in 212 proteins (42 high, 170 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
763034.HMPREF9446_02398(PF03720) (PF03721) (PF00984)ER
763034.HMPREF9446_03525(PF03720) (PF00984) (PF03721)ER
763034.HMPREF9446_01822(PF12972) (PF12971) (PF05089)ER
763034.HMPREF9446_03272PF02278 (PF02884) PF08124ER
763034.HMPREF9446_01797(PF00703) (PF16355) (PF02836)ER
763034.HMPREF9446_01013PF02278 (PF02884) PF08124ER
763034.HMPREF9446_02446(PF12972) (PF12971) (PF05089)ER
763034.HMPREF9446_02419(PF00728) (PF02838) (PF13287)ER
763034.HMPREF9446_01532(PF03720) (PF03721) (PF00984)ER
763034.HMPREF9446_00586(PF00703) (PF16355) (PF02836)ER
763034.HMPREF9446_03565(PF00703) (PF16355) (PF02836)ER
763034.HMPREF9446_01953(PF03720) (PF03721) (PF00984)ER
763034.HMPREF9446_01152PF02278 (PF02884) PF08124ER
763034.HMPREF9446_01142PF16332 (PF07940)ER
763034.HMPREF9446_02046(PF07470) (PF01095)(ER)
763034.HMPREF9446_01817(PF00703) (PF02836)ER
763034.HMPREF9446_00202(PF00703) (PF02836)(mitochondrial)
763034.HMPREF9446_01268(PF00728) (PF02838)ER
763034.HMPREF9446_03379(PF00703) (PF02836)ER
763034.HMPREF9446_00588(PF00703) (PF16355) (PF02836)(ER)
763034.HMPREF9446_03564(PF00728) (PF02838)ER
763034.HMPREF9446_03562(PF00728) (PF02838) (PF13287)(ER)
763034.HMPREF9446_03361(PF07470) (PF03629)ER
763034.HMPREF9446_02971(PF00728) (PF02838)ER
763034.HMPREF9446_02198(PF00728) (PF02838)ER
763034.HMPREF9446_02513(PF00703) (PF02836)ER
763034.HMPREF9446_03553(PF00728) (PF02838)ER
763034.HMPREF9446_03491(PF03720) (PF03721) (PF00984)(ER)
763034.HMPREF9446_02950(PF00728) (PF02838)ER
763034.HMPREF9446_01159(PF00703) (PF02836)ER
763034.HMPREF9446_01978(PF01095)ER
763034.HMPREF9446_02007(PF00295)ER
763034.HMPREF9446_02804(PF07470)ER
763034.HMPREF9446_02805(PF06824)ER
763034.HMPREF9446_00177(PF00216)(mitochondrial)
763034.HMPREF9446_00175(PF00953)ER
763034.HMPREF9446_02934(PF13402)ER
763034.HMPREF9446_01606(PF00295)ER
763034.HMPREF9446_01605(PF00703)ER
763034.HMPREF9446_02483(PF00953)ER
763034.HMPREF9446_03518(PF00953)ER
763034.HMPREF9446_00740(PF12862)ER
763034.HMPREF9446_00344PF13905ER
763034.HMPREF9446_01169(PF02544)ER
763034.HMPREF9446_02120(PF14771)ER
763034.HMPREF9446_01993(PF17170)ER
763034.HMPREF9446_01992(PF17170)ER
763034.HMPREF9446_02915PF13905ER
763034.HMPREF9446_01752PF13905(ER); ER
763034.HMPREF9446_02132(PF00295)ER
763034.HMPREF9446_01934PF13905ER
763034.HMPREF9446_02598(PF00953)ER
763034.HMPREF9446_02044(PF01095)ER
763034.HMPREF9446_00699(PF00295)(ER)
763034.HMPREF9446_02698(PF07470)ER
763034.HMPREF9446_03271(PF17132)mitochondrial; (mitochondrial)
763034.HMPREF9446_01814(PF07940)(mitochondrial)
763034.HMPREF9446_01815(PF03629)ER
763034.HMPREF9446_01811(PF07470)ER
763034.HMPREF9446_03423PF04479ER
763034.HMPREF9446_02872(PF02719)mitochondrial
763034.HMPREF9446_01490(PF09820)ER; (ER)
763034.HMPREF9446_01304(PF16011)ER
763034.HMPREF9446_01014(PF00295)ER
763034.HMPREF9446_01015(PF07470)ER
763034.HMPREF9446_03789PF13905ER
763034.HMPREF9446_02305(PF03720) (PF00984) (PF03721)
763034.HMPREF9446_02301PF13905ER
763034.HMPREF9446_02785PF13905ER
763034.HMPREF9446_01471(PF14684)ER
763034.HMPREF9446_01070(PF17170)ER
763034.HMPREF9446_02250(PF13320)ER
763034.HMPREF9446_01694(PF01715)(ER)
763034.HMPREF9446_02332(PF09471)ER
763034.HMPREF9446_03755(PF00953)ER
763034.HMPREF9446_03374(PF17132)ER
763034.HMPREF9446_03370(PF07470)ER
763034.HMPREF9446_00236(PF00703) (PF16355) (PF02836)
763034.HMPREF9446_00878(PF17170)ER
763034.HMPREF9446_02989PF13905ER
763034.HMPREF9446_03263(PF14684)ER
763034.HMPREF9446_00587(PF07470)ER
763034.HMPREF9446_01185(PF09471)ER
763034.HMPREF9446_03560(PF03629)ER
763034.HMPREF9446_03561(PF00703)ER
763034.HMPREF9446_03362(PF17132)ER
763034.HMPREF9446_03364(PF00295)ER
763034.HMPREF9446_03365(PF17132)(ER)
763034.HMPREF9446_01604(PF00703)ER
763034.HMPREF9446_00460(PF03720) (PF03721) (PF00984)
763034.HMPREF9446_00461PF02278 (PF02884) PF08124
763034.HMPREF9446_02487(PF14684)ER
763034.HMPREF9446_00602PF02278ER
763034.HMPREF9446_02420(PF06824)(mitochondrial)
763034.HMPREF9446_02424(PF13287)ER
763034.HMPREF9446_01557(PF00295)ER
763034.HMPREF9446_02286(PF03720) (PF03721) (PF00984)
763034.HMPREF9446_02700(PF07940)ER
763034.HMPREF9446_02705PF16332 (PF07940)(mitochondrial)
763034.HMPREF9446_03547(PF03629)ER
763034.HMPREF9446_03385PF02278 PF08124(ER)
763034.HMPREF9446_01158(PF07470)ER
763034.HMPREF9446_01156(PF07470)ER
763034.HMPREF9446_00543(PF00703) (PF02836)
763034.HMPREF9446_01741(PF05970) PF02689
763034.HMPREF9446_00363PF01807 (PF13155)
763034.HMPREF9446_02901(PF08011) (PF09820)
763034.HMPREF9446_01823(PF02838)(ER)
763034.HMPREF9446_03464PF01807 (PF13155)
763034.HMPREF9446_00968(PF08011) (PF09820)
763034.HMPREF9446_02837(PF01633)(mitochondrial)
763034.HMPREF9446_03980(PF00216)(mitochondrial)
763034.HMPREF9446_03727PF01807 (PF13155)
763034.HMPREF9446_00352PF01807 (PF13155)
763034.HMPREF9446_00207(PF00703) (PF02836)
763034.HMPREF9446_01137PF16332 (PF07940)
763034.HMPREF9446_01489(PF08011) (PF09820)
763034.HMPREF9446_00991(PF05693)(mitochondrial)
763034.HMPREF9446_03780(PF01715)(plastid)
763034.HMPREF9446_02786(PF03412)(plastid)
763034.HMPREF9446_00646(PF03412)(mitochondrial)
763034.HMPREF9446_03914PF01807 (PF13155)
763034.HMPREF9446_00473PF02357(mitochondrial)
763034.HMPREF9446_02988(PF03412)(mitochondrial)
763034.HMPREF9446_01982(PF05970) PF02689
763034.HMPREF9446_02438PF01807 (PF13155)
763034.HMPREF9446_02485PF02357(ER)
763034.HMPREF9446_00867(PF04326)(mitochondrial)
763034.HMPREF9446_00141(PF13402)(ER)
763034.HMPREF9446_01545(PF08011) (PF09820)not used
763034.HMPREF9446_01897(PF02971) (PF07837)
763034.HMPREF9446_02704PF16332 (PF07940)
763034.HMPREF9446_02578(PF00216)(mitochondrial)
763034.HMPREF9446_02650(PF00216)
763034.HMPREF9446_03710(PF00216)
763034.HMPREF9446_00387(PF13155)
763034.HMPREF9446_03850(PF09820)
763034.HMPREF9446_02546(PF13481)
763034.HMPREF9446_02723(PF02719)
763034.HMPREF9446_03822(PF00216)
763034.HMPREF9446_00777(PF00216)
763034.HMPREF9446_00373(PF00216)
763034.HMPREF9446_02902(PF04326)
763034.HMPREF9446_02480(PF00216)
763034.HMPREF9446_02026(PF17170)
763034.HMPREF9446_03466(PF13481)
763034.HMPREF9446_03726(PF13481)
763034.HMPREF9446_02056(PF03412)
763034.HMPREF9446_03052PF02357
763034.HMPREF9446_03509(PF00216)
763034.HMPREF9446_00351(PF13481)
763034.HMPREF9446_01116(PF08011)not used
763034.HMPREF9446_02599(PF01041)
763034.HMPREF9446_03664(PF09820)
763034.HMPREF9446_03668(PF01041)
763034.HMPREF9446_03507(PF01041)
763034.HMPREF9446_01920(PF03412)
763034.HMPREF9446_03413(PF09820)
763034.HMPREF9446_03414(PF08011)
763034.HMPREF9446_01130PF16332
763034.HMPREF9446_03429(PF00216)
763034.HMPREF9446_01491(PF09820)
763034.HMPREF9446_02478(PF13481)
763034.HMPREF9446_02272(PF01041)
763034.HMPREF9446_03788PF13905
763034.HMPREF9446_02783(PF09820)
763034.HMPREF9446_02784(PF08011)not used
763034.HMPREF9446_02868PF02357
763034.HMPREF9446_01668(PF00216)
763034.HMPREF9446_01660(PF03630)
763034.HMPREF9446_02466(PF02719)
763034.HMPREF9446_01845PF02357
763034.HMPREF9446_02649(PF00216)not used
763034.HMPREF9446_03687(PF01041)
763034.HMPREF9446_03689PF07959
763034.HMPREF9446_01676(PF07470)
763034.HMPREF9446_01675(PF13320)
763034.HMPREF9446_02413PF02357
763034.HMPREF9446_02411(PF02719)
763034.HMPREF9446_03121(PF03054)
763034.HMPREF9446_01196(PF03412)
763034.HMPREF9446_01047(PF13155)
763034.HMPREF9446_01046(PF13481)
763034.HMPREF9446_02409(PF01041)
763034.HMPREF9446_01537(PF01041)
763034.HMPREF9446_03754PF02357
763034.HMPREF9446_03116(PF07470)
763034.HMPREF9446_03575PF02357
763034.HMPREF9446_03579(PF01633)
763034.HMPREF9446_00472(PF02719)
763034.HMPREF9446_00471(PF01041)
763034.HMPREF9446_03219(PF00953)
763034.HMPREF9446_00466(PF01041)
763034.HMPREF9446_00138(PF00216)
763034.HMPREF9446_01423(PF16314)
763034.HMPREF9446_01084(PF04326)
763034.HMPREF9446_02600(PF00216)
763034.HMPREF9446_02606PF02357
763034.HMPREF9446_02512(PF03054)
763034.HMPREF9446_03485PF02357
763034.HMPREF9446_03489(PF01041)
763034.HMPREF9446_00854(PF03054)
763034.HMPREF9446_03283PF16269
763034.HMPREF9446_03517PF02357
763034.HMPREF9446_01721(PF00958)
763034.HMPREF9446_01722(PF00958)
763034.HMPREF9446_01540(PF03031)
763034.HMPREF9446_03168(PF03412)
763034.HMPREF9446_03493(PF01041)
763034.HMPREF9446_02957(PF00216)
763034.HMPREF9446_01378(PF13481)
763034.HMPREF9446_01571(PF04326)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================