Metamenu

Effective results for Bacteroides coprocola DSM 17136 (eggnog40)

Summary

Number of putative secreted proteins: 317
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 51 eukaryotic-like domains, contained in 317 proteins (131 high, 186 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
470145.BACCOP_03500(PF16334) (PF16335) (PF17168) (PF08760)ER
470145.BACCOP_03250(PF02838) (PF00728) (PF13287)ER
470145.BACCOP_00849(PF02838) (PF00728) (PF13287)ER
470145.BACCOP_01882(PF02838) (PF00728) (PF13287)(ER); ER
470145.BACCOP_01372(PF14310) (PF01915)(ER)
470145.BACCOP_04139(PF02838) (PF00728)ER
470145.BACCOP_03878(PF14310) (PF01915)ER
470145.BACCOP_01534(PF14310) (PF01915)ER
470145.BACCOP_03257(PF02838) (PF00728)ER
470145.BACCOP_03256(PF02838) (PF00728)ER
470145.BACCOP_03505(PF14310) (PF01915)ER
470145.BACCOP_03507(PF14310) (PF01915)ER
470145.BACCOP_00726(PF02838) (PF00728)mitochondrial
470145.BACCOP_00728(PF14310) (PF01915)ER
470145.BACCOP_01059(PF14310) (PF01915)ER
470145.BACCOP_01546(PF14310) (PF01915)ER
470145.BACCOP_00580(PF13905)ER
470145.BACCOP_01989(PF13431)ER
470145.BACCOP_04118(PF00589)mitochondrial
470145.BACCOP_04025(PF03051)ER
470145.BACCOP_02982(PF07971)ER
470145.BACCOP_02983PF03663ER
470145.BACCOP_02984PF01609ER; (ER)
470145.BACCOP_02271(PF12437)(mitochondrial)
470145.BACCOP_03477PF03663ER; (ER)
470145.BACCOP_02371(PF02929)ER
470145.BACCOP_04323(PF02544)ER
470145.BACCOP_02885(PF00295)ER
470145.BACCOP_01208(PF00589)mitochondrial; (mitochondrial)
470145.BACCOP_00347(PF13905)ER
470145.BACCOP_00348(PF13431)ER
470145.BACCOP_01834PF01609ER; (ER)
470145.BACCOP_04135(PF16401)(ER)
470145.BACCOP_00652(PF07971)ER
470145.BACCOP_03059(PF13148)ER
470145.BACCOP_03873PF01609ER; (ER)
470145.BACCOP_04123(PF13905)ER
470145.BACCOP_00466(PF02929)ER
470145.BACCOP_00664(PF07971)ER
470145.BACCOP_00257(PF00295)ER
470145.BACCOP_03780PF01610(mitochondrial)
470145.BACCOP_04376(PF07971)ER
470145.BACCOP_04375(PF07971)ER
470145.BACCOP_04372(PF07971)ER
470145.BACCOP_01805(PF13905)ER
470145.BACCOP_02934(PF00589)(mitochondrial)
470145.BACCOP_03537(PF09471)ER
470145.BACCOP_01798PF14771ER
470145.BACCOP_01794PF01609ER; (ER)
470145.BACCOP_03887(PF02929)ER
470145.BACCOP_02326(PF07971)ER
470145.BACCOP_02327(PF04450)ER
470145.BACCOP_02328(PF07971)ER
470145.BACCOP_04062(PF00589)(mitochondrial)
470145.BACCOP_00663PF03663ER
470145.BACCOP_00662PF03663ER
470145.BACCOP_01008PF01609ER; (ER)
470145.BACCOP_03425(PF03051)ER
470145.BACCOP_02354(PF01915)ER
470145.BACCOP_02351(PF07971)ER
470145.BACCOP_03103(PF01095)ER
470145.BACCOP_01105PF03432(mitochondrial)
470145.BACCOP_00438(PF00589)ER
470145.BACCOP_02588(PF09471)(ER)
470145.BACCOP_03366(PF01095)ER
470145.BACCOP_00572PF01609ER; (ER)
470145.BACCOP_03561PF01610ER
470145.BACCOP_01112(PF00589)mitochondrial
470145.BACCOP_02977PF03663ER
470145.BACCOP_02972PF03663ER
470145.BACCOP_03376(PF01095)ER
470145.BACCOP_01122(PF00078)(mitochondrial)
470145.BACCOP_02969(PF13415)ER
470145.BACCOP_04391(PF07971)ER
470145.BACCOP_03148(PF00589)(mitochondrial); mitochondrial
470145.BACCOP_02039PF01609ER; (ER)
470145.BACCOP_02539(PF00295)ER
470145.BACCOP_01607(PF13155)(ER)
470145.BACCOP_03558(PF00589)(mitochondrial)
470145.BACCOP_02604PF01609ER; (ER)
470145.BACCOP_00389PF01609ER; (ER)
470145.BACCOP_00546(PF02929)ER
470145.BACCOP_00543PF01610(mitochondrial)
470145.BACCOP_00768(PF12437)(mitochondrial)
470145.BACCOP_01961(PF13905)ER
470145.BACCOP_02835(PF00589)(mitochondrial)
470145.BACCOP_04040(PF00589)(mitochondrial)
470145.BACCOP_03830(PF03051)ER
470145.BACCOP_03955PF01609ER; (ER)
470145.BACCOP_03489(PF07971)ER
470145.BACCOP_04052(PF00589)mitochondrial; (mitochondrial)
470145.BACCOP_03003(PF00078)(mitochondrial)
470145.BACCOP_02999PF01609ER; (ER)
470145.BACCOP_00975PF01610(mitochondrial)
470145.BACCOP_02529(PF00295)(mitochondrial)
470145.BACCOP_02157(PF14310) (PF01915)
470145.BACCOP_04125(PF02838)(ER)
470145.BACCOP_01817(PF00589)(mitochondrial)
470145.BACCOP_02933(PF00078) PF01348
470145.BACCOP_02425(PF00398)(mitochondrial)
470145.BACCOP_01623(PF13151)(mitochondrial)
470145.BACCOP_00427(PF14310) (PF01915)
470145.BACCOP_03429(PF00589)(mitochondrial)
470145.BACCOP_02355(PF14310) (PF01915)
470145.BACCOP_00994(PF14310) (PF01915)
470145.BACCOP_00183(PF01131)(plastid)
470145.BACCOP_00917(PF00078) PF01348
470145.BACCOP_03141(PF01131)(plastid)
470145.BACCOP_01554(PF00589)(mitochondrial)
470145.BACCOP_02836(PF00078) PF01348
470145.BACCOP_01701(PF00589)(mitochondrial)
470145.BACCOP_00373(PF09112) (PF09113)
470145.BACCOP_01881(PF03571)(ER)
470145.BACCOP_00112PF03432(mitochondrial)
470145.BACCOP_03529(PF00589)(mitochondrial)
470145.BACCOP_03924(PF00295)
470145.BACCOP_01189(PF00589)
470145.BACCOP_03057(PF03050)not used
470145.BACCOP_02857(PF02689)
470145.BACCOP_03038(PF00078)
470145.BACCOP_04024PF01609
470145.BACCOP_03218(PF00589)
470145.BACCOP_03101(PF01095)
470145.BACCOP_01662PF03432
470145.BACCOP_03176PF01609
470145.BACCOP_01172(PF13155)
470145.BACCOP_03857PF01609
470145.BACCOP_03932PF01609
470145.BACCOP_03939(PF05693)
470145.BACCOP_00132(PF13155)
470145.BACCOP_04101(PF16011)
470145.BACCOP_02861(PF00078)
470145.BACCOP_04035PF03432
470145.BACCOP_04037(PF13148)
470145.BACCOP_00008PF01610not used
470145.BACCOP_01770(PF02384)
470145.BACCOP_00919PF03432
470145.BACCOP_02882PF01609
470145.BACCOP_02089(PF00589)
470145.BACCOP_01206PF03432
470145.BACCOP_03907PF01609
470145.BACCOP_00349(PF00589)
470145.BACCOP_01839PF03432
470145.BACCOP_04134PF01609
470145.BACCOP_04130PF01609
470145.BACCOP_02470PF01609
470145.BACCOP_02474(PF00078)
470145.BACCOP_02475(PF00078)
470145.BACCOP_02657PF01610
470145.BACCOP_01695(PF03050)not used
470145.BACCOP_04122(PF16314)
470145.BACCOP_04126(PF16401)
470145.BACCOP_01825(PF01131)
470145.BACCOP_01827(PF02384)
470145.BACCOP_00069(PF03050)not used
470145.BACCOP_01220(PF00589)
470145.BACCOP_03860PF01609
470145.BACCOP_00326(PF03050)not used
470145.BACCOP_00492(PF01131)
470145.BACCOP_00070(PF00589)
470145.BACCOP_00071PF01609not used
470145.BACCOP_00670(PF03050)
470145.BACCOP_04378(PF07971)
470145.BACCOP_03323(PF03571)
470145.BACCOP_02302PF01609
470145.BACCOP_02305PF01609
470145.BACCOP_02120(PF00078)
470145.BACCOP_02121PF01609
470145.BACCOP_02123(PF00078)
470145.BACCOP_00814PF01609
470145.BACCOP_03892PF01610
470145.BACCOP_00260(PF00398)not used
470145.BACCOP_03083(PF00589)
470145.BACCOP_03089PF03432
470145.BACCOP_04366PF01609not used
470145.BACCOP_02939PF01609
470145.BACCOP_02932(PF00589)
470145.BACCOP_02111PF01610
470145.BACCOP_00862(PF09471)
470145.BACCOP_03964PF01609not used
470145.BACCOP_01797PF01609not used
470145.BACCOP_01240PF01610not used
470145.BACCOP_01241PF01610
470145.BACCOP_01301PF01609
470145.BACCOP_00060PF01609
470145.BACCOP_02450PF01609
470145.BACCOP_00063(PF02384)
470145.BACCOP_00062(PF02384)
470145.BACCOP_00419PF01609
470145.BACCOP_01873PF01609
470145.BACCOP_04232PF01610
470145.BACCOP_03653(PF13155)
470145.BACCOP_00695PF01609
470145.BACCOP_03430(PF00078)
470145.BACCOP_02697PF01610
470145.BACCOP_03343(PF00295)
470145.BACCOP_02498PF01609
470145.BACCOP_02109PF01610
470145.BACCOP_02747PF01609
470145.BACCOP_02219PF01609not used
470145.BACCOP_01470(PF00078)
470145.BACCOP_01310(PF00589)
470145.BACCOP_02818(PF03050)not used
470145.BACCOP_00197PF01609not used
470145.BACCOP_00198(PF07971)
470145.BACCOP_01861PF01609
470145.BACCOP_01862PF01609not used
470145.BACCOP_00204PF01609not used
470145.BACCOP_00203PF01609
470145.BACCOP_00426(PF01715)
470145.BACCOP_03356PF01609
470145.BACCOP_01483(PF09295)
470145.BACCOP_04238(PF00078)
470145.BACCOP_04231PF01609
470145.BACCOP_02357(PF03054)
470145.BACCOP_02352PF01609
470145.BACCOP_02174PF01609
470145.BACCOP_01265(PF03054)
470145.BACCOP_04108PF01609
470145.BACCOP_00993PF01609
470145.BACCOP_01072(PF00589)
470145.BACCOP_01109(PF13148)
470145.BACCOP_01103(PF03050)not used
470145.BACCOP_00180(PF13155)
470145.BACCOP_00001PF01609
470145.BACCOP_01929(PF00589)
470145.BACCOP_01857(PF13155)
470145.BACCOP_03634PF01610
470145.BACCOP_03189PF03432
470145.BACCOP_03299PF01610
470145.BACCOP_04246(PF00589)
470145.BACCOP_03296PF01609
470145.BACCOP_02345(PF03050)
470145.BACCOP_02342PF01609not used
470145.BACCOP_01586PF01610
470145.BACCOP_01580PF03432
470145.BACCOP_00854(PF00302)
470145.BACCOP_00852(PF00078)
470145.BACCOP_02010PF01609
470145.BACCOP_00222(PF02384)
470145.BACCOP_00227(PF13151)
470145.BACCOP_03990PF01609
470145.BACCOP_00085(PF00398)
470145.BACCOP_00087PF01609not used
470145.BACCOP_02970PF01609
470145.BACCOP_00157(PF02384)
470145.BACCOP_01660PF01609
470145.BACCOP_03178PF01609
470145.BACCOP_02803PF01609
470145.BACCOP_00093(PF03050)
470145.BACCOP_01941(PF00589)
470145.BACCOP_03139(PF02384)
470145.BACCOP_02967PF01609
470145.BACCOP_00700(PF05704)
470145.BACCOP_00417(PF03050)not used
470145.BACCOP_02494PF01609
470145.BACCOP_04060(PF13148)
470145.BACCOP_04269(PF00398)
470145.BACCOP_02389PF01609not used
470145.BACCOP_00159(PF01131)
470145.BACCOP_03386(PF00078)not used
470145.BACCOP_03385PF01609
470145.BACCOP_02921PF01610
470145.BACCOP_03041PF01609not used
470145.BACCOP_01549PF01609
470145.BACCOP_00398PF01609
470145.BACCOP_00553PF01609
470145.BACCOP_00774PF01609not used
470145.BACCOP_00773(PF03050)not used
470145.BACCOP_03776(PF00589)
470145.BACCOP_03775PF01609
470145.BACCOP_03778PF01610not used
470145.BACCOP_04074(PF03050)
470145.BACCOP_04075(PF00078)
470145.BACCOP_04077PF01609
470145.BACCOP_02557(PF00078)
470145.BACCOP_02556(PF01715)
470145.BACCOP_04270PF01609not used
470145.BACCOP_02735PF01610
470145.BACCOP_02739PF01610
470145.BACCOP_00958(PF00589)
470145.BACCOP_00957(PF00589)
470145.BACCOP_01897PF07959
470145.BACCOP_01890PF01610
470145.BACCOP_00544(PF00295)
470145.BACCOP_00542PF01610
470145.BACCOP_03496PF01609
470145.BACCOP_03494PF01609
470145.BACCOP_03492PF01609
470145.BACCOP_02940(PF03050)not used
470145.BACCOP_00760PF01609
470145.BACCOP_00163(PF00589)
470145.BACCOP_03707PF01609
470145.BACCOP_02831(PF03054)
470145.BACCOP_00613PF01609
470145.BACCOP_01633(PF02384)
470145.BACCOP_04046PF01609
470145.BACCOP_04049(PF02384)
470145.BACCOP_01705(PF13155)
470145.BACCOP_03238(PF01131)
470145.BACCOP_03419(PF03050)
470145.BACCOP_01394PF01609
470145.BACCOP_03954PF01609
470145.BACCOP_00571PF03663not used
470145.BACCOP_03717(PF00078)
470145.BACCOP_02848(PF02384)
470145.BACCOP_01626PF01609
470145.BACCOP_03001(PF00398)
470145.BACCOP_04055(PF00589)
470145.BACCOP_04299PF16269
470145.BACCOP_02994(PF13155)
470145.BACCOP_02283PF01609
470145.BACCOP_00978(PF00302)
470145.BACCOP_00088PF14771
470145.BACCOP_02873PF01609
470145.BACCOP_01363PF01609
470145.BACCOP_01362(PF03050)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================