Metamenu

Effective results for Bacteroides finegoldii DSM 17565 (eggnog40)

Summary

Number of putative secreted proteins: 330
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 72 eukaryotic-like domains, contained in 330 proteins (54 high, 276 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
483215.BACFIN_08828(PF16353) (PF00703) (PF02929) (PF02837) (PF02836)ER
483215.BACFIN_06780(PF02929) (PF00703) (PF16353) (PF02837) (PF02836)ER
483215.BACFIN_08005(PF16353) (PF00703) (PF02929) (PF02837) (PF02836)ER
483215.BACFIN_08062(PF02929) (PF00703) (PF16353) (PF02837) (PF02836)(ER)
483215.BACFIN_06779(PF02929) (PF00703) (PF02837) (PF02836)ER
483215.BACFIN_05401(PF00933) PF16116 (PF01915) (PF14310)ER
483215.BACFIN_05052(PF00703) (PF02837) (PF02836)ER
483215.BACFIN_08780(PF00933) (PF01915) (PF14310)ER
483215.BACFIN_05586(PF00933) (PF01915) (PF14310)ER
483215.BACFIN_06782(PF00703) (PF02837) (PF02836)ER
483215.BACFIN_04827(PF00933) (PF01915) (PF14310)ER; (ER)
483215.BACFIN_04823(PF00703) (PF02837) (PF02836)ER
483215.BACFIN_07923(PF00703) (PF02837) (PF02836)ER
483215.BACFIN_04811(PF00933) (PF01915) (PF14310)ER
483215.BACFIN_07116(PF00933) (PF01915) (PF14310)ER
483215.BACFIN_07109(PF00933) (PF01915) (PF14310)ER
483215.BACFIN_05407(PF00933) (PF01915) (PF14310)ER
483215.BACFIN_07820(PF00933) (PF01915) (PF14310)(ER)
483215.BACFIN_07768(PF00933) (PF01915) (PF14310)ER
483215.BACFIN_05096(PF00933) (PF01915) (PF14310)ER
483215.BACFIN_05095(PF00933) (PF01915) (PF14310)ER
483215.BACFIN_05093(PF00933) (PF01915) (PF14310)ER
483215.BACFIN_05060(PF00703) (PF02837) (PF02836)ER
483215.BACFIN_05909(PF17132) (PF02837)ER
483215.BACFIN_06774(PF00703) (PF02837) (PF02836)(ER)
483215.BACFIN_08277(PF16889) (PF07940)ER
483215.BACFIN_07941(PF16889) (PF07940)ER
483215.BACFIN_07946(PF16332) (PF07940)ER
483215.BACFIN_07935(PF16889) (PF07940)ER
483215.BACFIN_07933(PF16889) (PF07940)ER
483215.BACFIN_08285(PF16332) (PF07940)ER
483215.BACFIN_08639(PF13086) (PF13087)ER
483215.BACFIN_06127(PF07470) (PF01095)ER
483215.BACFIN_06107(PF00703) (PF02837)ER
483215.BACFIN_05268(PF03544)ER
483215.BACFIN_09249(PF14498)ER
483215.BACFIN_06800(PF00295)(ER)
483215.BACFIN_04985(PF00589)(mitochondrial)
483215.BACFIN_06349PF02544ER
483215.BACFIN_09253(PF03253)(mitochondrial)
483215.BACFIN_08816(PF01624)mitochondrial; (mitochondrial)
483215.BACFIN_06170(PF07971)ER
483215.BACFIN_06777(PF17132)ER
483215.BACFIN_07314(PF07470)ER
483215.BACFIN_06778(PF13905)ER
483215.BACFIN_06917(PF03796)(mitochondrial)
483215.BACFIN_05157(PF13385)ER
483215.BACFIN_08654(PF13385)ER
483215.BACFIN_08470(PF00930)ER
483215.BACFIN_08580(PF16317)ER
483215.BACFIN_06371(PF13385)ER
483215.BACFIN_08316(PF00933)ER
483215.BACFIN_08641(PF00933) (PF01915) (PF14310)
483215.BACFIN_08646(PF02836)ER
483215.BACFIN_06792(PF14498)ER
483215.BACFIN_07443PF03432mitochondrial; (mitochondrial)
483215.BACFIN_08260(PF13905)ER
483215.BACFIN_05178(PF00589)mitochondrial; (mitochondrial)
483215.BACFIN_05778(PF00589)(mitochondrial)
483215.BACFIN_08011(PF13385)ER
483215.BACFIN_07939(PF07470)ER
483215.BACFIN_08304(PF14771)(ER)
483215.BACFIN_06095(PF00295)ER
483215.BACFIN_06093(PF00703) (PF02837) (PF02836)
483215.BACFIN_06092(PF17132)ER
483215.BACFIN_06091(PF07470)ER
483215.BACFIN_08493(PF00930)ER
483215.BACFIN_08494(PF00930)ER
483215.BACFIN_06304(PF00303)mitochondrial; (mitochondrial)
483215.BACFIN_08581(PF13385)ER
483215.BACFIN_05546(PF00295)ER
483215.BACFIN_05781(PF03544)ER
483215.BACFIN_08852(PF00930)mitochondrial
483215.BACFIN_06946(PF13905)ER
483215.BACFIN_07306(PF07940)ER
483215.BACFIN_04826(PF00933) (PF01915) (PF14310)
483215.BACFIN_06081(PF00295)ER
483215.BACFIN_04795(PF13905)ER
483215.BACFIN_06531(PF12437)mitochondrial; (mitochondrial)
483215.BACFIN_08278(PF07470)ER
483215.BACFIN_08067(PF07470)ER
483215.BACFIN_08069(PF02278)ER
483215.BACFIN_07045(PF00295)ER
483215.BACFIN_05571(PF02278)ER
483215.BACFIN_09157PF12812ER
483215.BACFIN_09054(PF00589)(mitochondrial)
483215.BACFIN_04812(PF07470)ER
483215.BACFIN_04815PF16116ER
483215.BACFIN_05363(PF13385)ER
483215.BACFIN_07126(PF13287)(ER)
483215.BACFIN_06185(PF03253)ER; (ER)
483215.BACFIN_06506(PF13287)ER; (ER)
483215.BACFIN_09230(PF13385)ER
483215.BACFIN_07279(PF00589) (PF13495)(mitochondrial)
483215.BACFIN_05358(PF13385)ER
483215.BACFIN_05353(PF07971)ER
483215.BACFIN_05352(PF07971)ER
483215.BACFIN_05225(PF00589)(mitochondrial)
483215.BACFIN_05224(PF00589)ER; (ER)
483215.BACFIN_05426(PF03544)ER
483215.BACFIN_05230PF13155(mitochondrial); mitochondrial
483215.BACFIN_06451(PF05693)ER
483215.BACFIN_06071(PF07470)(mitochondrial)
483215.BACFIN_06072(PF00295)ER; (ER)
483215.BACFIN_08099PF16994(mitochondrial)
483215.BACFIN_07652(PF05970) PF02689(plastid)
483215.BACFIN_07254PF03432(mitochondrial)
483215.BACFIN_07498(PF01095)ER
483215.BACFIN_07496(PF00295)ER
483215.BACFIN_04756(PF00589)(mitochondrial)
483215.BACFIN_07818(PF13385)ER
483215.BACFIN_06060(PF00295)ER
483215.BACFIN_08579(PF07971)ER
483215.BACFIN_05717(PF13385)ER
483215.BACFIN_09115(PF16313)ER
483215.BACFIN_05665(PF00589)mitochondrial
483215.BACFIN_05257PF02544ER
483215.BACFIN_04710(PF14587)ER
483215.BACFIN_04711(PF14587)ER
483215.BACFIN_06015(PF00589)(mitochondrial)
483215.BACFIN_06126(PF01095)ER
483215.BACFIN_08164(PF09295)ER
483215.BACFIN_05267(PF03544)ER
483215.BACFIN_06391(PF07971)ER
483215.BACFIN_06392(PF03663)ER
483215.BACFIN_06393(PF03663)ER
483215.BACFIN_08370(PF03544)ER
483215.BACFIN_08779(PF00933) (PF01915) (PF14310)
483215.BACFIN_07026(PF13385)ER
483215.BACFIN_08516(PF14498)ER
483215.BACFIN_08512(PF16313)ER
483215.BACFIN_08513(PF16313)ER
483215.BACFIN_07607(PF03544)ER
483215.BACFIN_09004(PF07940)ER
483215.BACFIN_09006(PF00112)ER
483215.BACFIN_05277(PF00216)(mitochondrial)
483215.BACFIN_05274(PF03544)ER
483215.BACFIN_05272(PF03544)ER
483215.BACFIN_08335(PF13385)ER
483215.BACFIN_07294(PF00295)ER
483215.BACFIN_06109(PF00295)ER
483215.BACFIN_07502(PF14498)ER
483215.BACFIN_07503(PF01095)ER
483215.BACFIN_08525(PF00930)ER
483215.BACFIN_07610(PF03544)ER
483215.BACFIN_06815(PF07971)ER
483215.BACFIN_05610(PF03663)(ER)
483215.BACFIN_05611(PF06824)ER
483215.BACFIN_05105(PF13385)ER
483215.BACFIN_05914(PF00303)(mitochondrial)
483215.BACFIN_04836(PF00216)(mitochondrial)
483215.BACFIN_06112(PF05970) PF02689
483215.BACFIN_06808PF09820 (PF08011)
483215.BACFIN_05593PF09820 (PF08011)
483215.BACFIN_09064PF09820 (PF08011)
483215.BACFIN_05907(PF07470)(mitochondrial)
483215.BACFIN_08786(PF02384)(ER)
483215.BACFIN_06832(PF00216)(mitochondrial)
483215.BACFIN_04991(PF13086) (PF13087)
483215.BACFIN_05804(PF13086) (PF13087)
483215.BACFIN_06353(PF13086) (PF13087)
483215.BACFIN_07771PF09820 (PF08011)
483215.BACFIN_05034PF09820 (PF08011)
483215.BACFIN_06367PF09820 (PF08011)
483215.BACFIN_06131(PF13086) (PF13087)
483215.BACFIN_08201(PF00589)(mitochondrial)
483215.BACFIN_06793(PF07470)(ER)
483215.BACFIN_07332(PF00589)(mitochondrial)
483215.BACFIN_05013(PF00589) (PF13495)
483215.BACFIN_08851(PF01715)plastid
483215.BACFIN_07855(PF01610)(mitochondrial)
483215.BACFIN_07407(PF00589) (PF13495)
483215.BACFIN_07666(PF00589) (PF13495)
483215.BACFIN_07592PF09820 (PF08011)
483215.BACFIN_09082(PF01610)(mitochondrial); not used
483215.BACFIN_04819PF16116(ER)
483215.BACFIN_07698PF09820 (PF08011)
483215.BACFIN_05223(PF00589)(mitochondrial)
483215.BACFIN_04747PF03432(mitochondrial)
483215.BACFIN_08636(PF12437)(mitochondrial)
483215.BACFIN_07263PF13481 PF13155
483215.BACFIN_07260(PF01131)(plastid)
483215.BACFIN_07392(PF00589)(mitochondrial)
483215.BACFIN_06669PF03432(plastid)
483215.BACFIN_08889(PF00589) (PF13495)
483215.BACFIN_05099(PF00112)plastid
483215.BACFIN_07835(PF01610)(mitochondrial)
483215.BACFIN_06860(PF02357)(mitochondrial)
483215.BACFIN_04716PF09820 (PF08011)
483215.BACFIN_06829(PF03796)
483215.BACFIN_07227(PF00589)
483215.BACFIN_07190PF13481
483215.BACFIN_07197(PF01637)
483215.BACFIN_05448(PF03054)
483215.BACFIN_07403(PF00589)
483215.BACFIN_07402(PF00589)
483215.BACFIN_07401(PF00589)
483215.BACFIN_06807(PF08011)
483215.BACFIN_06809PF09820not used
483215.BACFIN_05594(PF00216)
483215.BACFIN_05628(PF00216)
483215.BACFIN_06932(PF01610)
483215.BACFIN_08820PF09820
483215.BACFIN_08821PF09820
483215.BACFIN_08822(PF08011)
483215.BACFIN_05053(PF07971)
483215.BACFIN_04988(PF08707)
483215.BACFIN_05908(PF07470)
483215.BACFIN_06343(PF03544)
483215.BACFIN_06581(PF02357)
483215.BACFIN_06697PF13155
483215.BACFIN_07744PF16269
483215.BACFIN_08250(PF01610)not used
483215.BACFIN_09077(PF03544)
483215.BACFIN_08794(PF00216)
483215.BACFIN_07795(PF02357)
483215.BACFIN_05035PF09820
483215.BACFIN_05036(PF00216)
483215.BACFIN_05324(PF02384)
483215.BACFIN_05326(PF01131)
483215.BACFIN_05811(PF13087)not used
483215.BACFIN_06366(PF01131)
483215.BACFIN_05818(PF02384)
483215.BACFIN_05001(PF00589)
483215.BACFIN_05004PF13481
483215.BACFIN_07898PF03432
483215.BACFIN_05812(PF00589)
483215.BACFIN_05556(PF16011)
483215.BACFIN_07200(PF02384)
483215.BACFIN_07202(PF01131)
483215.BACFIN_06977(PF01610)not used
483215.BACFIN_06979(PF04326)
483215.BACFIN_05177(PF06824)
483215.BACFIN_05777(PF00589)
483215.BACFIN_05779(PF04383)
483215.BACFIN_05016(PF02384)
483215.BACFIN_05017(PF01637)
483215.BACFIN_05015(PF02384)
483215.BACFIN_04839(PF00165)not used
483215.BACFIN_04838(PF01131)
483215.BACFIN_05307(PF04326)
483215.BACFIN_05304PF03432
483215.BACFIN_06307(PF00216)
483215.BACFIN_06415PF07959
483215.BACFIN_08108(PF00216)
483215.BACFIN_08073(PF03054)
483215.BACFIN_07322(PF03054)
483215.BACFIN_05786PF03432
483215.BACFIN_08298(PF01637)
483215.BACFIN_05762(PF04326)
483215.BACFIN_04797(PF00589)
483215.BACFIN_07854(PF01610)not used
483215.BACFIN_05995PF13155
483215.BACFIN_07138PF09820
483215.BACFIN_06620(PF03796)
483215.BACFIN_07043(PF07470)
483215.BACFIN_09221(PF01610)
483215.BACFIN_09220(PF00958)
483215.BACFIN_07668(PF02357)
483215.BACFIN_07597(PF00589)
483215.BACFIN_07591PF09820
483215.BACFIN_05680PF13155
483215.BACFIN_05199(PF12224)
483215.BACFIN_05193(PF00589)not used
483215.BACFIN_09055(PF00589)
483215.BACFIN_05968(PF01610)
483215.BACFIN_06694(PF01624)
483215.BACFIN_05560(PF02278)
483215.BACFIN_09235PF13481
483215.BACFIN_05691(PF14237)
483215.BACFIN_07477(PF00589)not used
483215.BACFIN_09141(PF00216)
483215.BACFIN_07902PF13155
483215.BACFIN_04971(PF00589)
483215.BACFIN_06330(PF00303)
483215.BACFIN_08603(PF01715)
483215.BACFIN_06607(PF08707)
483215.BACFIN_06045(PF04326)
483215.BACFIN_06047(PF02384)
483215.BACFIN_08047(PF14237)
483215.BACFIN_08733PF13155
483215.BACFIN_08736(PF01624)
483215.BACFIN_08951(PF16314)
483215.BACFIN_08953(PF00589)
483215.BACFIN_05642(PF00589)
483215.BACFIN_05349(PF07971)
483215.BACFIN_07804(PF00589)
483215.BACFIN_08701PF13481
483215.BACFIN_04754(PF00589)
483215.BACFIN_05889(PF03544)
483215.BACFIN_06444(PF01991)
483215.BACFIN_06716(PF02384)
483215.BACFIN_08572(PF00958)
483215.BACFIN_08406PF13481
483215.BACFIN_05667(PF00589)
483215.BACFIN_05668(PF00589)
483215.BACFIN_04926(PF12224)
483215.BACFIN_05897(PF00216)
483215.BACFIN_05872(PF04326)
483215.BACFIN_08768(PF04326)
483215.BACFIN_05526(PF00216)
483215.BACFIN_06122(PF01095)
483215.BACFIN_08185(PF01610)not used
483215.BACFIN_05416PF13155
483215.BACFIN_08989(PF04383)
483215.BACFIN_05705(PF03796)
483215.BACFIN_08981(PF14237)
483215.BACFIN_05672(PF01624)
483215.BACFIN_07833(PF03544)
483215.BACFIN_05064(PF01610)not used
483215.BACFIN_05284PF13155
483215.BACFIN_08372(PF00589)
483215.BACFIN_06008(PF01131)
483215.BACFIN_07282(PF07940)
483215.BACFIN_08196PF03432
483215.BACFIN_07514PF13481
483215.BACFIN_08202(PF00589)
483215.BACFIN_07510(PF00589)
483215.BACFIN_08206PF13481
483215.BACFIN_08992PF13155
483215.BACFIN_08993PF13481
483215.BACFIN_08996(PF00589)
483215.BACFIN_09139(PF00216)not used
483215.BACFIN_05273(PF03544)
483215.BACFIN_06037PF03432
483215.BACFIN_07509(PF14310)
483215.BACFIN_07611(PF03544)
483215.BACFIN_06819(PF04383)
483215.BACFIN_04713(PF00216)
483215.BACFIN_05989PF03432

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================