Effective results for Bacteroides fragilis 3_1_12 (eggnog40)
Summary
Number of putative secreted proteins: 362
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 78 eukaryotic-like domains, contained in 362 proteins (102 high, 260 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 457424.BFAG_03492 | (PF00703) (PF16353) (PF02836) (PF02929) (PF00754) (PF02837) | ER | |||
| 457424.BFAG_03355 | (PF00703) (PF16353) (PF02836) (PF02837) (PF02929) | ER | |||
| 457424.BFAG_00263 | (PF00703) (PF16353) (PF02836) (PF02837) (PF02929) | ER | |||
| 457424.BFAG_02845 | (PF00703) (PF02929) (PF02836) (PF02837) (PF16353) | (ER) | |||
| 457424.BFAG_03356 | (PF00754) (PF02838) (PF13287) (PF00728) | ER | |||
| 457424.BFAG_03942 | (PF00703) (PF02929) (PF02836) (PF02837) | ER | |||
| 457424.BFAG_02678 | PF16334 PF08760 PF16335 PF17168 | ER | |||
| 457424.BFAG_02666 | PF16334 PF08760 PF16335 PF17168 | ER | |||
| 457424.BFAG_00071 | (PF00703) (PF02929) (PF02836) (PF02837) (PF16353) | ||||
| 457424.BFAG_01544 | (PF00703) (PF02836) (PF02837) | ER | |||
| 457424.BFAG_00567 | (PF00703) (PF02836) (PF02837) | ER | |||
| 457424.BFAG_01003 | (PF00703) (PF02836) (PF02837) | (ER) | |||
| 457424.BFAG_02679 | (PF00703) (PF02836) (PF02837) | ER | |||
| 457424.BFAG_01077 | (PF00703) (PF02836) (PF02837) | ER | |||
| 457424.BFAG_01074 | (PF00703) (PF02836) (PF02837) | ER | |||
| 457424.BFAG_01070 | (PF02838) (PF00754) (PF00728) | ER | |||
| 457424.BFAG_02343 | (PF00703) (PF02836) (PF00754) (PF02837) | ||||
| 457424.BFAG_02641 | (PF02838) (PF00728) | (mitochondrial) | |||
| 457424.BFAG_02642 | (PF00703) (PF02836) (PF02837) | (mitochondrial) | |||
| 457424.BFAG_00860 | (PF02687) (PF12704) | mitochondrial | |||
| 457424.BFAG_00856 | (PF02687) (PF12704) | mitochondrial | |||
| 457424.BFAG_03354 | (PF01120) (PF00754) | ER | |||
| 457424.BFAG_00269 | (PF00703) (PF02837) | (ER); ER | |||
| 457424.BFAG_01211 | (PF02687) (PF12704) | (mitochondrial) | |||
| 457424.BFAG_00850 | (PF02687) (PF12704) | mitochondrial | |||
| 457424.BFAG_00076 | (PF02838) (PF00728) | ER | |||
| 457424.BFAG_00070 | (PF01120) (PF00754) | ER | |||
| 457424.BFAG_01227 | (PF00703) (PF02836) (PF00754) (PF02837) | ||||
| 457424.BFAG_02620 | (PF14684) (PF03572) | (ER) | |||
| 457424.BFAG_00844 | (PF02687) (PF12704) | mitochondrial; (mitochondrial) | |||
| 457424.BFAG_00846 | (PF02687) (PF12704) | mitochondrial | |||
| 457424.BFAG_00848 | (PF02687) (PF12704) | mitochondrial | |||
| 457424.BFAG_02196 | (PF02838) (PF00728) | ER | |||
| 457424.BFAG_03487 | (PF00754) (PF01120) | ER | |||
| 457424.BFAG_04612 | (PF00703) (PF02836) (PF02837) | plastid | |||
| 457424.BFAG_01523 | (PF02687) (PF12704) | mitochondrial | |||
| 457424.BFAG_00940 | (PF02687) (PF12704) | (mitochondrial) | |||
| 457424.BFAG_00942 | (PF02687) (PF12704) | mitochondrial | |||
| 457424.BFAG_03367 | (PF02838) (PF00728) | ER | |||
| 457424.BFAG_03360 | (PF02838) (PF00728) | ER | |||
| 457424.BFAG_01775 | (PF02687) (PF12704) | mitochondrial | |||
| 457424.BFAG_01771 | (PF02687) (PF12704) | mitochondrial | |||
| 457424.BFAG_01773 | (PF02687) (PF12704) | (ER) | |||
| 457424.BFAG_00041 | (PF02687) (PF12704) | (ER) | |||
| 457424.BFAG_01948 | (PF02687) (PF12704) | ER | |||
| 457424.BFAG_01942 | (PF02687) (PF12704) | mitochondrial | |||
| 457424.BFAG_01943 | (PF02687) (PF12704) | mitochondrial | |||
| 457424.BFAG_01941 | (PF02687) (PF12704) | mitochondrial | |||
| 457424.BFAG_01944 | (PF02687) (PF12704) | mitochondrial | |||
| 457424.BFAG_01945 | (PF02687) (PF12704) | mitochondrial | |||
| 457424.BFAG_02007 | (PF14684) (PF03572) | ER | |||
| 457424.BFAG_04470 | (PF14684) (PF03572) | ER | |||
| 457424.BFAG_01566 | (PF02838) (PF00728) | ER | |||
| 457424.BFAG_00215 | (PF00754) (PF01120) | ER | |||
| 457424.BFAG_03468 | (PF02687) (PF12704) | mitochondrial | |||
| 457424.BFAG_03885 | (PF02838) (PF00728) | ER; (ER) | |||
| 457424.BFAG_04069 | (PF02687) (PF12704) | mitochondrial | |||
| 457424.BFAG_00223 | (PF09112) (PF09113) | ER | |||
| 457424.BFAG_01066 | (PF02838) (PF00728) | ER | |||
| 457424.BFAG_01072 | (PF02838) (PF00728) | ER | |||
| 457424.BFAG_01946 | (PF02687) (PF12704) | mitochondrial | |||
| 457424.BFAG_04142 | PF17170 | ER | |||
| 457424.BFAG_03110 | (PF06250) | mitochondrial | |||
| 457424.BFAG_01038 | (PF02719) | mitochondrial | |||
| 457424.BFAG_02657 | PF17170 | ER | |||
| 457424.BFAG_02653 | (PF07944) | ER | |||
| 457424.BFAG_00900 | (PF00953) | ER | |||
| 457424.BFAG_00492 | PF17170 | ER | |||
| 457424.BFAG_04158 | (PF07944) | ER | |||
| 457424.BFAG_04151 | PF17170 | ER | |||
| 457424.BFAG_03106 | (PF06250) | (mitochondrial) | |||
| 457424.BFAG_03107 | (PF00589) | mitochondrial | |||
| 457424.BFAG_01055 | (PF16757) (PF01120) | (plastid) | |||
| 457424.BFAG_01204 | (PF03572) | ER | |||
| 457424.BFAG_00861 | (PF02687) | (mitochondrial) | |||
| 457424.BFAG_00915 | PF01823 | ER | |||
| 457424.BFAG_00919 | (PF13905) | ER | |||
| 457424.BFAG_01739 | (PF00589) | (mitochondrial) | |||
| 457424.BFAG_04903 | (PF00589) | (mitochondrial); mitochondrial | |||
| 457424.BFAG_03931 | (PF07971) | ER | |||
| 457424.BFAG_01898 | (PF03572) | ER | |||
| 457424.BFAG_04583 | (PF02080) | ER | |||
| 457424.BFAG_04748 | (PF02709) | ER | |||
| 457424.BFAG_00851 | (PF02687) | (mitochondrial); mitochondrial | |||
| 457424.BFAG_02743 | PF17170 | ER | |||
| 457424.BFAG_02744 | PF17170 | ER | |||
| 457424.BFAG_04176 | (PF00754) | ER | |||
| 457424.BFAG_00586 | (PF02080) | ER | |||
| 457424.BFAG_01229 | (PF02350) | (mitochondrial) | |||
| 457424.BFAG_02564 | PF17170 | ER | |||
| 457424.BFAG_02561 | PF17170 | ER | |||
| 457424.BFAG_00845 | (PF02687) | mitochondrial | |||
| 457424.BFAG_00847 | (PF02687) | (mitochondrial); mitochondrial | |||
| 457424.BFAG_00849 | (PF02687) | mitochondrial | |||
| 457424.BFAG_02194 | PF17170 | ER | |||
| 457424.BFAG_02284 | PF17170 | ER | |||
| 457424.BFAG_01718 | (PF00589) | (mitochondrial) | |||
| 457424.BFAG_03570 | PF01823 | ER | |||
| 457424.BFAG_00064 | (PF07971) | ER | |||
| 457424.BFAG_00459 | (PF00589) | (mitochondrial) | |||
| 457424.BFAG_00069 | (PF00754) | ER | |||
| 457424.BFAG_04170 | (PF03572) | ER | |||
| 457424.BFAG_03488 | PF17170 | ER | |||
| 457424.BFAG_00669 | (PF02080) | ER | |||
| 457424.BFAG_01069 | (PF00703) | ER | |||
| 457424.BFAG_04613 | (PF01120) | ER | |||
| 457424.BFAG_02996 | PF02357 | (mitochondrial) | |||
| 457424.BFAG_01158 | (PF02350) | (mitochondrial) | |||
| 457424.BFAG_01522 | PF17170 | ER | |||
| 457424.BFAG_01700 | (PF03118) | ER | |||
| 457424.BFAG_02147 | PF17170 | ER | |||
| 457424.BFAG_03499 | (PF13905) | ER | |||
| 457424.BFAG_00435 | (PF00953) | ER | |||
| 457424.BFAG_04115 | PF17170 | ER | |||
| 457424.BFAG_04111 | PF17170 | ER | |||
| 457424.BFAG_03145 | (PF00754) | ER | |||
| 457424.BFAG_03146 | (PF00754) | ER | |||
| 457424.BFAG_02961 | (PF03415) | ER | |||
| 457424.BFAG_02965 | PF12812 | ER | |||
| 457424.BFAG_01094 | (PF03415) | ER | |||
| 457424.BFAG_04425 | (PF02838) | ER | |||
| 457424.BFAG_03812 | (PF02544) | ER | |||
| 457424.BFAG_03816 | (PF13086) | mitochondrial | |||
| 457424.BFAG_02772 | (PF05686) | mitochondrial; (mitochondrial) | |||
| 457424.BFAG_02773 | (PF01531) | (ER); (mitochondrial) | |||
| 457424.BFAG_04388 | (PF03572) | ER | |||
| 457424.BFAG_04385 | PF17170 | ER | |||
| 457424.BFAG_04383 | PF17170 | ER | |||
| 457424.BFAG_04382 | PF17170 | ER | |||
| 457424.BFAG_04381 | PF17170 | ER | |||
| 457424.BFAG_04706 | (PF11175) | (ER) | |||
| 457424.BFAG_03956 | (PF00953) | ER | |||
| 457424.BFAG_03735 | (PF00953) | (ER); ER | |||
| 457424.BFAG_01763 | (PF02080) | ER | |||
| 457424.BFAG_00561 | PF02183 | ER | |||
| 457424.BFAG_03058 | (PF02719) | ER; (ER) | |||
| 457424.BFAG_00095 | (PF07971) | ER | |||
| 457424.BFAG_00092 | (PF07971) | ER | |||
| 457424.BFAG_00091 | (PF07971) | ER | |||
| 457424.BFAG_02948 | PF17170 | ER | |||
| 457424.BFAG_02945 | PF17170 | ER | |||
| 457424.BFAG_03940 | PF17170 | ER | |||
| 457424.BFAG_03941 | (PF00754) | ER | |||
| 457424.BFAG_01169 | (PF00589) | (mitochondrial) | |||
| 457424.BFAG_04400 | PF17170 | ER | |||
| 457424.BFAG_01162 | (PF00953) | ER | |||
| 457424.BFAG_04405 | PF17039 | ER | |||
| 457424.BFAG_02836 | PF17170 | ER | |||
| 457424.BFAG_00974 | PF01823 | ER | |||
| 457424.BFAG_03535 | PF17170 | mitochondrial | |||
| 457424.BFAG_03537 | (PF01120) | ER | |||
| 457424.BFAG_03531 | (PF07971) | ER | |||
| 457424.BFAG_03266 | (PF08124) | (ER) | |||
| 457424.BFAG_04275 | PF17170 | ER | |||
| 457424.BFAG_02485 | (PF14771) | ER | |||
| 457424.BFAG_02825 | PF17170 | ER | |||
| 457424.BFAG_01024 | PF17170 | ER | |||
| 457424.BFAG_04506 | (PF00589) | (mitochondrial) | |||
| 457424.BFAG_01291 | (PF00589) | (mitochondrial); mitochondrial | |||
| 457424.BFAG_00369 | (PF12437) | (mitochondrial) | |||
| 457424.BFAG_00367 | (PF02838) (PF13287) (PF00728) | ||||
| 457424.BFAG_02212 | (PF12437) | mitochondrial; (mitochondrial) | |||
| 457424.BFAG_04087 | (PF16401) | ER | |||
| 457424.BFAG_04267 | (PF11175) | ER | |||
| 457424.BFAG_03851 | (PF00754) | (ER) | |||
| 457424.BFAG_02116 | (PF02350) | (mitochondrial) | |||
| 457424.BFAG_02111 | (PF00953) | ER | |||
| 457424.BFAG_04842 | PF13155 | (ER) | |||
| 457424.BFAG_04219 | (PF13905) | ER | |||
| 457424.BFAG_02938 | PF17170 | mitochondrial | |||
| 457424.BFAG_03862 | (PF01120) | ER | |||
| 457424.BFAG_03509 | PF17170 | ER | |||
| 457424.BFAG_03090 | (PF00589) | mitochondrial; (mitochondrial) | |||
| 457424.BFAG_00233 | PF17170 | (mitochondrial) | |||
| 457424.BFAG_04682 | (PF03572) | ER | |||
| 457424.BFAG_04534 | (PF00589) | mitochondrial | |||
| 457424.BFAG_01249 | (PF03572) | ER | |||
| 457424.BFAG_02681 | (PF07944) | ER | |||
| 457424.BFAG_02682 | (PF07944) | ER | |||
| 457424.BFAG_02683 | (PF00703) (PF02836) (PF02837) | ||||
| 457424.BFAG_04059 | PF17170 | ER | |||
| 457424.BFAG_04051 | PF17170 | ER | |||
| 457424.BFAG_02310 | (PF00589) | (mitochondrial); mitochondrial | |||
| 457424.BFAG_00222 | (PF01120) | ER | |||
| 457424.BFAG_00857 | (PF02687) | mitochondrial | |||
| 457424.BFAG_02862 | (PF16401) | (ER) | |||
| 457424.BFAG_03798 | (PF09471) | ER | |||
| 457424.BFAG_02670 | PF01637 | (ER); ER | |||
| 457424.BFAG_04045 | PF17170 | ER | |||
| 457424.BFAG_04047 | PF17170 | ER | |||
| 457424.BFAG_01927 | (PF13905) | ER | |||
| 457424.BFAG_04228 | PF03432 | (mitochondrial) | |||
| 457424.BFAG_01073 | (PF07971) | ER | |||
| 457424.BFAG_02668 | (PF03663) | ER | |||
| 457424.BFAG_02665 | (PF07971) | ER | |||
| 457424.BFAG_03427 | (PF00216) | (mitochondrial) | |||
| 457424.BFAG_02248 | (PF02080) | ER | |||
| 457424.BFAG_03206 | PF17170 | (mitochondrial); mitochondrial | |||
| 457424.BFAG_01691 | PF01637 | (mitochondrial) | |||
| 457424.BFAG_04777 | PF13155 PF01807 | ||||
| 457424.BFAG_03746 | (PF00216) | (mitochondrial) | |||
| 457424.BFAG_04168 | (PF00754) (PF07944) | ||||
| 457424.BFAG_04341 | (PF07837) (PF02971) | ||||
| 457424.BFAG_02985 | (PF00589) | (plastid) | |||
| 457424.BFAG_00933 | (PF02687) (PF12704) | ||||
| 457424.BFAG_02999 | (PF04422) PF04432 | ||||
| 457424.BFAG_03620 | PF03432 | (ER) | |||
| 457424.BFAG_03967 | (PF04422) PF04432 | ||||
| 457424.BFAG_01389 | PF13155 PF01807 | ||||
| 457424.BFAG_04899 | PF13155 PF01807 | ||||
| 457424.BFAG_03996 | PF13155 PF01807 | ||||
| 457424.BFAG_04888 | (PF00589) | (mitochondrial) | |||
| 457424.BFAG_02921 | (PF14684) (PF03572) | ||||
| 457424.BFAG_00779 | PF13155 PF01807 | ||||
| 457424.BFAG_00205 | (PF02080) | (mitochondrial) | |||
| 457424.BFAG_02057 | (PF00589) | (mitochondrial) | |||
| 457424.BFAG_03475 | (PF13415) | (ER) | |||
| 457424.BFAG_01016 | (PF00589) | (mitochondrial) | |||
| 457424.BFAG_02474 | (PF02687) (PF12704) | ||||
| 457424.BFAG_02473 | (PF02687) (PF12704) | ||||
| 457424.BFAG_00685 | (PF00589) | (mitochondrial) | |||
| 457424.BFAG_01800 | (PF05970) PF02689 | ||||
| 457424.BFAG_00320 | (PF05970) PF02689 | ||||
| 457424.BFAG_04226 | PF13155 PF01807 | ||||
| 457424.BFAG_02061 | PF03727 PF00349 | ||||
| 457424.BFAG_04030 | (PF02350) | (mitochondrial) | |||
| 457424.BFAG_04149 | (PF02709) | ||||
| 457424.BFAG_04562 | (PF13481) | ||||
| 457424.BFAG_01041 | PF02357 | ||||
| 457424.BFAG_04567 | (PF07693) | ||||
| 457424.BFAG_04814 | (PF00589) | ||||
| 457424.BFAG_00874 | PF02357 | ||||
| 457424.BFAG_00876 | PF04432 | ||||
| 457424.BFAG_00902 | (PF00216) | ||||
| 457424.BFAG_00651 | (PF02719) | ||||
| 457424.BFAG_02342 | (PF02837) | ||||
| 457424.BFAG_04150 | PF17170 | ||||
| 457424.BFAG_04795 | PF03432 | ||||
| 457424.BFAG_04797 | (PF07693) | ||||
| 457424.BFAG_03108 | (PF00589) | ||||
| 457424.BFAG_03109 | (PF00589) | ||||
| 457424.BFAG_04571 | (PF00589) | ||||
| 457424.BFAG_01058 | (PF16757) | ||||
| 457424.BFAG_02140 | PF02357 | ||||
| 457424.BFAG_03926 | PF01637 | ||||
| 457424.BFAG_00649 | PF02357 | ||||
| 457424.BFAG_01735 | PF13155 | ||||
| 457424.BFAG_01736 | (PF13481) | ||||
| 457424.BFAG_03590 | PF01637 | ||||
| 457424.BFAG_00004 | (PF16314) | ||||
| 457424.BFAG_00463 | PF13155 | ||||
| 457424.BFAG_01993 | (PF00216) | ||||
| 457424.BFAG_01305 | PF03432 | ||||
| 457424.BFAG_01190 | (PF00216) | ||||
| 457424.BFAG_02512 | (PF00589) | ||||
| 457424.BFAG_02515 | (PF13481) | ||||
| 457424.BFAG_00465 | PF03432 | ||||
| 457424.BFAG_02293 | (PF05693) | ||||
| 457424.BFAG_02362 | (PF13481) | ||||
| 457424.BFAG_03582 | PF13155 | ||||
| 457424.BFAG_00295 | (PF03572) | ||||
| 457424.BFAG_03588 | (PF13151) | ||||
| 457424.BFAG_01853 | (PF00216) | ||||
| 457424.BFAG_04356 | (PF00589) | ||||
| 457424.BFAG_03011 | PF04432 | ||||
| 457424.BFAG_00930 | (PF08124) | ||||
| 457424.BFAG_01716 | PF03432 | ||||
| 457424.BFAG_01711 | (PF00589) | ||||
| 457424.BFAG_03577 | (PF00216) | ||||
| 457424.BFAG_00065 | (PF13415) | ||||
| 457424.BFAG_02375 | (PF00589) | ||||
| 457424.BFAG_04103 | (PF00216) | ||||
| 457424.BFAG_01149 | PF02357 | ||||
| 457424.BFAG_04290 | PF02357 | ||||
| 457424.BFAG_02991 | (PF00216) | ||||
| 457424.BFAG_01155 | (PF05704) | ||||
| 457424.BFAG_01157 | (PF02719) | ||||
| 457424.BFAG_01412 | (PF00589) | ||||
| 457424.BFAG_02142 | PF07959 | ||||
| 457424.BFAG_04605 | (PF00589) | ||||
| 457424.BFAG_04286 | (PF00589) | ||||
| 457424.BFAG_01091 | (PF00589) | ||||
| 457424.BFAG_00606 | (PF00754) | ||||
| 457424.BFAG_01604 | (PF00216) | ||||
| 457424.BFAG_02394 | (PF00216) | ||||
| 457424.BFAG_00420 | PF02357 | ||||
| 457424.BFAG_04129 | (PF00216) | ||||
| 457424.BFAG_04384 | PF17170 | ||||
| 457424.BFAG_03954 | (PF00216) | ||||
| 457424.BFAG_04415 | (PF00589) | ||||
| 457424.BFAG_01170 | (PF00589) | ||||
| 457424.BFAG_03737 | PF02357 | ||||
| 457424.BFAG_02705 | (PF00953) | ||||
| 457424.BFAG_04390 | PF17170 | ||||
| 457424.BFAG_04396 | (PF02709) | ||||
| 457424.BFAG_04575 | PF01637 | ||||
| 457424.BFAG_01052 | PF01637 | ||||
| 457424.BFAG_01168 | (PF00589) | not used | |||
| 457424.BFAG_01570 | (PF00589) | ||||
| 457424.BFAG_01371 | PF03432 | ||||
| 457424.BFAG_01281 | (PF13481) | ||||
| 457424.BFAG_00138 | PF02357 | ||||
| 457424.BFAG_01116 | (PF13905) | ||||
| 457424.BFAG_00629 | (PF03054) | ||||
| 457424.BFAG_02133 | (PF01531) | ||||
| 457424.BFAG_02130 | (PF00589) | ||||
| 457424.BFAG_00156 | (PF03031) | ||||
| 457424.BFAG_00710 | (PF06250) | ||||
| 457424.BFAG_04874 | PF03432 | ||||
| 457424.BFAG_04879 | PF03432 | ||||
| 457424.BFAG_03269 | (PF02350) | ||||
| 457424.BFAG_02480 | (PF05192) | ||||
| 457424.BFAG_02823 | (PF03054) | ||||
| 457424.BFAG_02033 | (PF02080) | ||||
| 457424.BFAG_01636 | PF13155 | ||||
| 457424.BFAG_00162 | (PF00216) | ||||
| 457424.BFAG_04640 | (PF05192) | ||||
| 457424.BFAG_04869 | PF03432 | ||||
| 457424.BFAG_03274 | PF02357 | ||||
| 457424.BFAG_00214 | PF05691 | ||||
| 457424.BFAG_02850 | (PF16011) | ||||
| 457424.BFAG_03980 | PF02357 | ||||
| 457424.BFAG_02117 | (PF02719) | ||||
| 457424.BFAG_03466 | (PF06250) | ||||
| 457424.BFAG_01138 | (PF02080) | ||||
| 457424.BFAG_03868 | (PF02080) | ||||
| 457424.BFAG_03641 | (PF13086) | ||||
| 457424.BFAG_02699 | (PF00216) | ||||
| 457424.BFAG_01656 | (PF07693) | ||||
| 457424.BFAG_00694 | (PF03118) | ||||
| 457424.BFAG_00749 | PF13155 | ||||
| 457424.BFAG_00748 | PF13155 | ||||
| 457424.BFAG_04064 | (PF00589) | ||||
| 457424.BFAG_00527 | PF02357 | ||||
| 457424.BFAG_02300 | (PF01991) | ||||
| 457424.BFAG_00235 | (PF01715) | ||||
| 457424.BFAG_04444 | (PF03054) | ||||
| 457424.BFAG_04334 | (PF03118) | ||||
| 457424.BFAG_04338 | (PF05192) | ||||
| 457424.BFAG_01336 | (PF00589) | ||||
| 457424.BFAG_03899 | (PF13905) | ||||
| 457424.BFAG_00481 | (PF00754) | ||||
| 457424.BFAG_02684 | (PF03663) | ||||
| 457424.BFAG_00529 | (PF02080) | ||||
| 457424.BFAG_01461 | (PF00589) | ||||
| 457424.BFAG_01465 | (PF00589) | ||||
| 457424.BFAG_00688 | (PF13481) | ||||
| 457424.BFAG_00689 | PF13155 | ||||
| 457424.BFAG_00352 | (PF01715) | ||||
| 457424.BFAG_01992 | (PF00216) | ||||
| 457424.BFAG_02315 | (PF00589) | ||||
| 457424.BFAG_00224 | (PF13086) | ||||
| 457424.BFAG_04233 | (PF06250) | ||||
| 457424.BFAG_04234 | (PF00589) | ||||
| 457424.BFAG_03135 | PF01637 | ||||
| 457424.BFAG_02677 | (PF00754) | ||||
| 457424.BFAG_04827 | PF03432 | ||||
| 457424.BFAG_04225 | (PF13481) | ||||
| 457424.BFAG_02127 | (PF13481) | ||||
| 457424.BFAG_02067 | (PF00216) | ||||
| 457424.BFAG_02669 | (PF09471) | ||||
| 457424.BFAG_00799 | PF03432 |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 0.375 (3/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.375 (3/8 KEGG proteins)
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- +43 1 4277 876681
- contact.cube@univie.ac.at
